# List of top-scoring protein chains for t04-100-30-stride-ebghtl hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1k3sA	113	7.52e-01		d.198.1.1	68120
1el5A	389	9.60e-01	1b3mA	c.3.1.2	30369
				d.16.1.3	37937
1n2fA	142	1.29e+00		d.227.1.1	79853
1jtvA	327	4.69e+00		c.2.1.2	84230
1fds	327	4.71e+00	1fds	c.2.1.2	29838
1ekeA	230	5.34e+00	1ekeA	c.55.3.1	33572
1p3jA	217	5.40e+00			
1iv3A	152	6.48e+00		d.79.5.1	76828
1osdA	72	1.07e+01			
1p7tA	731	1.15e+01			
1d8cA	723	1.23e+01	1d8cA	c.1.13.1	29325
1j97A	211	1.25e+01	1f5sA	c.108.1.4	62753
1i2aA	219	1.43e+01			
7a3hA	303	1.44e+01	7a3hA	c.1.8.3	28817
1l7mA	211	1.53e+01		c.108.1.4	73664
1jljA	189	1.70e+01		c.57.1.1	63169
1cm5A	759	1.73e+01	1cm5A	c.7.1.1	30671
1mkmA	249	1.73e+01		a.4.5.33	79242
				d.110.2.2	79243
1h16A	759	1.74e+01		c.7.1.1	76462
1o6uA	403	1.79e+01			
1d7oA	297	1.79e+01	1enp	c.2.1.2	29907
1of8A	370	1.79e+01			
1enp	312	1.80e+01	1enp	c.2.1.2	29906
1mg7A	417	1.82e+01		d.14.1.6	84954
				d.58.26.6	84955
1j24A	143	1.84e+01		c.52.1.20	84008
1l7dA	384	1.92e+01		c.2.1.4	77774
				c.23.12.2	77775
1ihcA	188	2.07e+01	1di6A	c.57.1.1	62379
1pkhA	204	2.12e+01			
1k3eA	156	2.18e+01		d.198.1.1	68103
1go2A	304	2.27e+01		b.43.4.2	76243
				c.25.1.1	76244
1que	303	2.34e+01	1fnc	b.43.4.2	25647
				c.25.1.1	31537
1c4kA	730	2.34e+01	1ordA	c.23.1.4	31273
				c.67.1.5	34502
				d.125.1.1	41123
1uspA	139	2.62e+01			
1jyoA	130	2.75e+01		d.198.1.1	67483
2tct	207	2.78e+01	2tct	a.4.1.9	16063
				a.121.1.1	19240
1j96A	323	2.81e+01		c.1.7.1	71616
1ctn	540	2.89e+01	1ctn	b.1.18.2	21876
				c.1.8.5	29005
				d.26.3.1	38439
1bwzA	274	2.90e+01	1bwzA	d.21.1.1	38337
				d.21.1.1	38338
1q0pA	223	3.02e+01			
1p77A	272	3.04e+01			
1gnuA	117	3.05e+01		d.15.1.3	65403
1f8gA	384	3.36e+01	1sayA	c.2.1.4	59695
				c.23.12.2	59696
3tss	194	3.71e+01	1aw7A	b.40.2.2	25160
				d.15.6.1	37749
1id1A	153	3.75e+01	1id1A	c.2.1.9	62286
1irsA	112	3.76e+01	1qqgA	b.55.1.2	26991
1g8aA	227	3.77e+01			
1ej1A	190	3.78e+01	1ejhA	d.86.1.1	40144
1zin	217	3.83e+01	1zin	c.37.1.1	31915
				g.41.2.1	45178