# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1k3sA 113 1.63e+00 d.198.1.1 68120 1d8cA 723 2.03e+00 1d8cA c.1.13.1 29325 1p3jA 217 2.25e+00 1n2fA 142 2.40e+00 d.227.1.1 79853 1v4vA 376 2.60e+00 1ekeA 230 2.93e+00 1ekeA c.55.3.1 33572 1p7tA 731 2.96e+00 1jljA 189 3.53e+00 c.57.1.1 63169 1ihcA 188 3.55e+00 1di6A c.57.1.1 62379 1go2A 304 4.25e+00 b.43.4.2 76243 c.25.1.1 76244 1el5A 389 4.74e+00 1b3mA c.3.1.2 30369 d.16.1.3 37937 1zin 217 5.39e+00 1zin c.37.1.1 31915 g.41.2.1 45178 1osdA 72 5.53e+00 1ogiA 303 5.74e+00 1que 303 6.10e+00 1fnc b.43.4.2 25647 c.25.1.1 31537 1o6uA 403 7.83e+00 1l8bA 190 1.06e+01 d.86.1.1 73683 1iv3A 152 1.26e+01 d.79.5.1 76828 1rl6A 177 1.36e+01 1rl6A d.141.1.1 41473 d.141.1.1 41474 1fdr 248 1.40e+01 1fdr b.43.4.2 25653 c.25.1.1 31543 1gqzA 274 1.47e+01 d.21.1.1 83311 d.21.1.1 83312 1jtvA 327 1.49e+01 c.2.1.2 84230 1fxkB 109 1.53e+01 1fxkA a.2.5.1 15704 1kktA 511 1.55e+01 a.102.2.1 68687 1ctn 540 1.59e+01 1ctn b.1.18.2 21876 c.1.8.5 29005 d.26.3.1 38439 1id1A 153 1.59e+01 1id1A c.2.1.9 62286 1fds 327 1.71e+01 1fds c.2.1.2 29838 1mkmA 249 1.81e+01 a.4.5.33 79242 d.110.2.2 79243 1mg7A 417 1.89e+01 d.14.1.6 84954 d.58.26.6 84955 1of8A 370 1.94e+01 1i2aA 219 1.97e+01 1bwzA 274 2.12e+01 1bwzA d.21.1.1 38337 d.21.1.1 38338 2tct 207 2.16e+01 2tct a.4.1.9 16063 a.121.1.1 19240 1h16A 759 2.19e+01 c.7.1.1 76462 1n7kA 234 2.24e+01 c.1.10.1 85374 1faeA 629 2.28e+01 1fce a.102.1.2 18837 1g9gA 629 2.35e+01 a.102.1.2 83279 1bw0A 416 2.42e+01 1bw0A c.67.1.1 34385 1pbgA 468 2.43e+01 1e70M c.1.8.4 28946 2trxA 108 2.51e+01 1thx c.47.1.1 32719 2plc 274 2.56e+01 2plc c.1.18.2 29614 1hqkA 154 2.67e+01 c.16.1.1 65902 1skoB 130 2.79e+01 1pkhA 204 2.85e+01 2fxb 81 2.86e+01 2fxb 3tss 194 2.93e+01 1aw7A b.40.2.2 25160 d.15.6.1 37749 1ohvA 472 2.98e+01 1jyoA 130 2.98e+01 d.198.1.1 67483 1iqzA 81 3.03e+01 d.58.1.4 66281 1koqA 253 3.06e+01 2cba b.74.1.1 27964 1i1wA 303 3.07e+01 c.1.8.3 76732 1aw7A 194 3.09e+01 1aw7A b.40.2.2 25164 d.15.6.1 37753 1o8uA 257 3.15e+01 c.14.1.3 81194 1cm5A 759 3.22e+01 1cm5A c.7.1.1 30671 1edqA 540 3.55e+01 1ctn b.1.18.2 21873 c.1.8.5 29002 d.26.3.1 38436 1neyA 247 3.55e+01 c.1.1.1 80449 1gqeA 365 3.63e+01 e.38.1.1 70351 1i45A 248 3.67e+01 1amk c.1.1.1 61665 1q0pA 223 3.79e+01 1q0sA 259 3.81e+01