# List of top-scoring protein chains for t04-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1n2fA 142 2.68e-01 d.227.1.1 79853 1k3sA 113 9.99e-01 d.198.1.1 68120 1el5A 389 1.99e+00 1b3mA c.3.1.2 30369 d.16.1.3 37937 1d8cA 723 2.10e+00 1d8cA c.1.13.1 29325 1p7tA 731 3.13e+00 1p3jA 217 3.94e+00 1ekeA 230 4.68e+00 1ekeA c.55.3.1 33572 1uspA 139 5.87e+00 1iv3A 152 6.80e+00 d.79.5.1 76828 2trxA 108 7.23e+00 1thx c.47.1.1 32719 1erv 105 7.30e+00 1erv c.47.1.1 32743 1ohvA 472 7.41e+00 1of8A 370 7.47e+00 1obr 326 8.01e+00 1aye c.56.5.2 33828 1id1A 153 8.22e+00 1id1A c.2.1.9 62286 1hl9A 449 8.84e+00 1aiu 105 9.51e+00 1erv c.47.1.1 32746 1i2aA 219 1.05e+01 1h16A 759 1.09e+01 c.7.1.1 76462 1rl6A 177 1.12e+01 1rl6A d.141.1.1 41473 d.141.1.1 41474 1osdA 72 1.13e+01 1jljA 189 1.18e+01 c.57.1.1 63169 1ihcA 188 1.18e+01 1di6A c.57.1.1 62379 1bw0A 416 1.23e+01 1bw0A c.67.1.1 34385 1ctn 540 1.28e+01 1ctn b.1.18.2 21876 c.1.8.5 29005 d.26.3.1 38439 1k32A 1045 1.43e+01 b.36.1.3 68068 b.68.7.1 68069 b.69.9.1 68070 c.14.1.2 68071 1pbgA 468 1.45e+01 1e70M c.1.8.4 28946 1kktA 511 1.46e+01 a.102.2.1 68687 1o6uA 403 1.46e+01 1g9gA 629 1.49e+01 a.102.1.2 83279 1j5uA 136 1.49e+01 d.208.1.1 71584 1kutA 230 1.55e+01 d.143.1.1 73017 1gqzA 274 1.59e+01 d.21.1.1 83311 d.21.1.1 83312 1cp2A 269 1.60e+01 1cp2A c.37.1.10 32269 1faeA 629 1.61e+01 1fce a.102.1.2 18837 1i1wA 303 1.66e+01 c.1.8.3 76732 2tct 207 1.66e+01 2tct a.4.1.9 16063 a.121.1.1 19240 1ek8A 185 1.66e+01 1ek8A d.67.3.1 59444 1fxmA 302 1.68e+01 1taxA 1j97A 211 1.73e+01 1f5sA c.108.1.4 62753 1jj2E 177 1.76e+01 1ffk1 d.141.1.1 63089 d.141.1.1 63090 1fds 327 1.83e+01 1fds c.2.1.2 29838 1jtvA 327 1.83e+01 c.2.1.2 84230 1l7mA 211 1.87e+01 c.108.1.4 73664 1cm5A 759 1.98e+01 1cm5A c.7.1.1 30671 1aua 296 2.02e+01 1aua a.5.3.1 16290 c.13.1.1 30882 2bvwA 362 2.04e+01 1bvwA c.6.1.1 30666 7a3hA 303 2.12e+01 7a3hA c.1.8.3 28817 1go2A 304 2.16e+01 b.43.4.2 76243 c.25.1.1 76244 1l8bA 190 2.20e+01 d.86.1.1 73683 1f6dA 376 2.25e+01 1f6dA c.87.1.3 35467 1c4kA 730 2.27e+01 1ordA c.23.1.4 31273 c.67.1.5 34502 d.125.1.1 41123 2plc 274 2.30e+01 2plc c.1.18.2 29614 1k3eA 156 2.36e+01 d.198.1.1 68103 1skoB 130 2.42e+01 1que 303 2.43e+01 1fnc b.43.4.2 25647 c.25.1.1 31537 1gtdA 85 2.87e+01 d.58.45.1 76344 1s6bA 119 2.88e+01 1edqA 540 2.90e+01 1ctn b.1.18.2 21873 c.1.8.5 29002 d.26.3.1 38436 1gg1A 350 3.00e+01 1qr7A c.1.10.4 29187 1ls1A 295 3.02e+01 a.24.13.1 78170 c.37.1.10 78171 1v4vA 376 3.02e+01 1dxeA 256 3.08e+01 1dxeA c.1.12.5 29310 1bwzA 274 3.08e+01 1bwzA d.21.1.1 38337 d.21.1.1 38338 1gnuA 117 3.09e+01 d.15.1.3 65403 1ogiA 303 3.13e+01 1ojaA 520 3.26e+01 1mkmA 249 3.30e+01 a.4.5.33 79242 d.110.2.2 79243 1kl9A 182 3.30e+01 b.40.4.5 72681 1n8fA 350 3.31e+01 c.1.10.4 85397 1s3eA 520 3.31e+01 1faaA 124 3.42e+01 1erv c.47.1.1 32738 1eu8A 409 3.45e+01 1eu8A c.94.1.1 59502 1nm2A 317 3.45e+01 c.19.1.1 80654 d.58.23.1 80655 1r13A 148 3.47e+01 1pkhA 204 3.49e+01 1i74A 309 3.91e+01 1i74A c.107.1.1 61867