# List of top-scoring protein chains for t04-100-30-bys hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ohvA 472 5.78e-01 c.67.1.4 -8181 2plc 274 6.51e-01 2plc c.1.18.2 29614 1que 303 6.94e-01 1fnc b.43.4.2 25647 c.25.1.1 31537 1fxkB 109 7.77e-01 1fxkA a.2.5.1 15704 1osdA 72 1.00e+00 1ogiA 303 1.05e+00 b.43.4.2 -4042 c.25.1.1 -6587 1go2A 304 1.10e+00 b.43.4.2 76243 c.25.1.1 76244 1pbgA 468 1.24e+00 1e70M c.1.8.4 28946 1zin 217 1.32e+00 1zin c.37.1.1 31915 g.41.2.1 45178 1k3sA 113 1.53e+00 d.198.1.1 68120 1nxcA 478 1.70e+00 a.102.2.1 -1333 1fe0A 68 2.66e+00 1cc8A d.58.17.1 39345 1obr 326 3.99e+00 1aye c.56.5.2 33828 1erv 105 4.25e+00 1erv c.47.1.1 32743 1aw7A 194 4.30e+00 1aw7A b.40.2.2 25164 d.15.6.1 37753 1v4vA 376 4.30e+00 c.87.1.3 -8583 2trxA 108 4.37e+00 1thx c.47.1.1 32719 1cp2A 269 4.70e+00 1cp2A c.37.1.10 32269 1fm2A 169 4.72e+00 1fm2A d.153.1.2 59877 1gnuA 117 4.97e+00 d.15.1.3 65403 1v7cA 351 5.05e+00 c.79.1.1 -8512 1rl6A 177 5.19e+00 1rl6A d.141.1.1 41473 d.141.1.1 41474 1p3jA 217 5.41e+00 c.37.1.1 -6996 g.41.2.1 -12769 1or0A 160 5.73e+00 d.153.1.2 -11415 1mwyA 73 5.73e+00 d.58.17.1 79616 2tct 207 6.19e+00 2tct a.4.1.9 16063 a.121.1.1 19240 1bw0A 416 6.58e+00 1bw0A c.67.1.1 34385 1ihcA 188 6.66e+00 1di6A c.57.1.1 62379 1gtmA 419 6.67e+00 1hwyA c.2.1.7 30223 c.58.1.1 33871 1gqzA 274 6.95e+00 d.21.1.1 83311 d.21.1.1 83312 1koqA 253 7.06e+00 2cba b.74.1.1 27964 1jljA 189 7.07e+00 c.57.1.1 63169 1nmeB 92 7.24e+00 1jtvA 327 7.51e+00 c.2.1.2 84230 1ek8A 185 7.59e+00 1ek8A d.67.3.1 59444 1id1A 153 8.02e+00 1id1A c.2.1.9 62286 8rucI 123 8.60e+00 1rboC d.73.1.1 39629 1fds 327 8.84e+00 1fds c.2.1.2 29838 1i7pA 274 8.87e+00 b.43.4.2 66048 c.25.1.1 66049 1dqaA 467 8.93e+00 1dqaA d.58.20.1 39364 d.179.1.1 42585 1j5yA 187 9.53e+00 a.4.5.1 71592 d.94.2.1 71593 1mkmA 249 9.66e+00 a.4.5.33 79242 d.110.2.2 79243 3tss 194 9.87e+00 1aw7A b.40.2.2 25160 d.15.6.1 37749 1q98A 165 9.93e+00 c.47.1.10 -7499 1ha1 184 1.03e+01 1ha1 d.58.7.1 39147 d.58.7.1 39148 1eu8A 409 1.05e+01 1eu8A c.94.1.1 59502 1n7kA 234 1.05e+01 c.1.10.1 85374 1efvA 315 1.05e+01 1efvA c.26.2.3 31633 c.31.1.2 31728 1b04A 318 1.09e+01 1b04A d.142.2.2 41579 1hgxA 183 1.11e+01 1tc1A c.61.1.1 34027 1aiu 105 1.13e+01 1erv c.47.1.1 32746 1gmeA 151 1.30e+01 b.15.1.1 65305 1v5wA 343 1.35e+01 1o6uA 403 1.36e+01 a.5.3.1 -366 unknown_sccs -3048 c.13.1.1 -6221 1mzhA 225 1.38e+01 c.1.10.1 79698 1n2fA 142 1.38e+01 d.227.1.1 79853 1dazC 99 1.42e+01 1hvc b.50.1.1 26501 1l3kA 196 1.43e+01 d.58.7.1 73539 d.58.7.1 73540 1pkhA 204 1.45e+01 b.85.4.1 -5053 1ekeA 230 1.48e+01 1ekeA c.55.3.1 33572 1guiA 155 1.52e+01 b.18.1.14 76351 1ufoA 238 1.54e+01 unknown_sccs -8303 1ik9A 213 1.56e+01 b.59.1.1 66176 h.1.11.1 66177 1bwzA 274 1.58e+01 1bwzA d.21.1.1 38337 d.21.1.1 38338 1c96A 753 1.72e+01 1amj c.8.2.1 30727 c.83.1.1 35403 1nkxA 348 1.73e+01 c.94.1.2 -8704 1g2qA 187 1.74e+01 c.61.1.1 65117 1vig 71 1.75e+01 1vih d.51.1.1 38806 1eo6A 117 1.83e+01 1eo6A d.15.1.3 37609 1r5tA 142 1.83e+01 1g99A 408 1.84e+01 1g99A c.55.1.2 33457 c.55.1.2 33458 1prxA 224 1.84e+01 1prxA c.47.1.10 33076 1sxjE 354 1.89e+01 1of8A 370 1.96e+01 c.1.10.4 -5508 1hl9A 449 1.98e+01 unknown_sccs -4694 unknown_sccs -5365 1s72E 178 2.03e+01 1lxnA 99 2.03e+01 d.58.48.1 84737 1e5eA 404 2.03e+01 1ibjA c.67.1.3 59265 1vjqA 79 2.16e+01 unknown_sccs -13478 1nh0A 99 2.22e+01 b.50.1.1 -4299 1f7cA 231 2.27e+01 1f7cA a.116.1.1 19107 1czyA 168 2.27e+01 1d0aB b.8.1.1 23220 h.1.2.1 45427 1uqtA 482 2.30e+01 c.87.1.6 -8593 1bmdA 327 2.32e+01 1bmdA c.2.1.5 30139 d.162.1.1 42106 1bdmA 327 2.40e+01 1bmdA c.2.1.5 30137 d.162.1.1 42104 1gw5S 142 2.49e+01 d.110.4.2 70633 1d4aA 273 2.52e+01 1d4aA c.23.5.3 31219 1k9sA 237 2.52e+01 c.56.2.1 68359 1edqA 540 2.54e+01 1ctn b.1.18.2 21873 c.1.8.5 29002 d.26.3.1 38436 4pah 308 2.55e+01 4pah d.178.1.1 42576 1difA 99 2.61e+01 1fmb b.50.1.1 26503 1ctn 540 2.63e+01 1ctn b.1.18.2 21876 c.1.8.5 29005 d.26.3.1 38439 1d2kA 392 2.63e+01 1d2kA c.1.8.5 29008 d.26.3.1 38442 1s7jA 262 2.65e+01 d.21.1.2 -9424 1j24A 143 2.68e+01 c.52.1.20 84008 1jj2E 177 2.69e+01 1ffk1 d.141.1.1 63089 d.141.1.1 63090 1dq3A 454 2.69e+01 1dq3A b.86.1.2 28380 d.50.3.1 38798 d.95.2.2 40585 d.95.2.2 40586 1iynA 295 2.81e+01 a.93.1.1 -1244 1ll7A 392 2.83e+01 c.1.8.5 78085 d.26.3.1 78086 1us5A 314 2.86e+01 c.94.1.1 -8686 1enp 312 2.87e+01 1enp c.2.1.2 29906 1ugmA 125 2.87e+01 1h16A 759 2.91e+01 c.7.1.1 76462 1btkA 169 2.91e+01 1btkA b.55.1.1 26959 1uch 230 2.93e+01 1uch d.3.1.6 37129 1j5uA 136 2.96e+01 d.208.1.1 71584 1h7cA 108 2.98e+01 a.7.5.1 70914 1iy8A 267 3.00e+01 c.2.1.2 83774 1iyxA 432 3.01e+01 c.1.11.1 83815 d.54.1.1 83816 1burS 123 3.03e+01 1rboC 1szoA 257 3.05e+01 1tidB 119 3.05e+01 1i4yA 114 3.09e+01 2mhr a.24.4.1 61738 1jdrA 294 3.17e+01 1ryc a.93.1.1 62908 1ghpA 258 3.19e+01 1btl e.3.1.1 60520 1avyA 74 3.23e+01 1avyB h.1.17.1 45656 1idk 359 3.27e+01 1qcxA b.80.1.2 28025 1o8uA 257 3.30e+01 c.14.1.3 81194 1r62A 160 3.37e+01 1jqgA 433 3.38e+01 c.56.5.1 71791 d.58.3.1 71792 1pjhA 280 3.39e+01 c.14.1.3 -6229 1l8bA 190 3.43e+01 d.86.1.1 73683 1jyoA 130 3.45e+01 d.198.1.1 67483 2hmqA 113 3.47e+01 2mhr a.24.4.1 16568 1r7lA 110 3.51e+01 1vhwA 253 3.54e+01 c.56.2.1 -7765 1ub9A 100 3.66e+01 a.4.5.28 -231 1uiuA 502 3.68e+01 c.94.1.1 -8674 1qghA 156 3.70e+01 1qghA a.25.1.1 16728 1ifqA 138 3.72e+01 1ifqA d.110.4.1 62350 1hh1A 143 3.76e+01 1gefA c.52.1.18 61036 1ecpA 238 3.77e+01 1ecpA c.56.2.1 33775 1rvaA 244 3.87e+01 1rvaA c.52.1.2 33240 1f9mA 112 3.87e+01 1erv c.47.1.1 32736 1xo1A 291 3.89e+01 1exnA a.60.7.1 18086 c.120.1.2 33356 1jltA 122 3.99e+01 a.133.1.2 66867 1go4A 205 4.00e+01 d.135.1.1 70292