# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1qghA 156 3.66e-01 1qghA a.25.1.1 16728 1l7mA 211 2.74e+00 c.108.1.4 73664 1i4yA 114 2.75e+00 2mhr a.24.4.1 61738 1zin 217 3.39e+00 1zin c.37.1.1 31915 g.41.2.1 45178 1l8bA 190 3.90e+00 d.86.1.1 73683 1avpA 204 4.37e+00 1avpA d.3.1.7 37132 1ohvA 472 4.77e+00 1j97A 211 4.83e+00 1f5sA c.108.1.4 62753 1nlnA 204 5.49e+00 153l 185 5.68e+00 153l d.2.1.5 36984 2hmqA 113 7.13e+00 2mhr a.24.4.1 16568 2hmzA 113 8.02e+00 2mhr a.24.4.1 16564 1sdjA 310 9.69e+00 1j7dA 145 1.29e+01 1jatB d.20.1.1 62680 1f46A 140 1.29e+01 1f46A d.129.4.1 59643 1htqA 477 1.38e+01 d.15.9.1 71035 d.128.1.1 71036 1oe4A 247 1.39e+01 c.18.1.3 86895 1hjrA 158 1.42e+01 1hjrA c.55.3.6 33727 1c8bA 371 1.44e+01 1c8bA c.56.1.2 59082 1mzgA 146 1.45e+01 d.224.1.1 79696 1aw7A 194 1.50e+01 1aw7A b.40.2.2 25164 d.15.6.1 37753 1jqgA 433 1.55e+01 c.56.5.1 71791 d.58.3.1 71792 1g9gA 629 1.55e+01 a.102.1.2 83279 1omwA 689 1.56e+01 a.91.1.1 87086 b.55.1.1 87087 d.144.1.7 87088 1gk9B 557 1.56e+01 1v7cA 351 1.59e+01 1s0pA 176 1.65e+01 1fecA 490 1.69e+01 3grs c.3.1.5 30489 c.3.1.5 30490 d.87.1.1 40176 1f7cA 231 1.71e+01 1f7cA a.116.1.1 19107 1g87A 614 1.73e+01 a.102.1.2 83275 b.2.2.2 83276 1koqA 253 1.74e+01 2cba b.74.1.1 27964 1qpcA 279 1.81e+01 1fgkA d.144.1.7 41685 1pf5A 131 1.88e+01 1mc2A 122 1.94e+01 a.133.1.2 74622 1f3z 161 1.98e+01 1gpr b.84.3.1 28273 2if1 126 2.01e+01 2if1 d.64.1.1 39547 1ek8A 185 2.16e+01 1ek8A d.67.3.1 59444 1pbgA 468 2.17e+01 1e70M c.1.8.4 28946 1k3sA 113 2.17e+01 d.198.1.1 68120 1m33A 258 2.21e+01 c.69.1.26 78514 1a0p 290 2.30e+01 1a0p a.60.9.1 18105 d.163.1.1 42165 1jx6A 342 2.32e+01 c.93.1.1 67406 1faeA 629 2.36e+01 1fce a.102.1.2 18837 1efvA 315 2.42e+01 1efvA c.26.2.3 31633 c.31.1.2 31728 1h4pA 408 2.47e+01 1me4A 215 2.49e+01 d.3.1.1 79023 1e3aB 560 2.51e+01 1ajqB 1ga3A 113 2.53e+01 1ga3A a.26.1.2 60411 1f2aA 215 2.56e+01 1cs8A d.3.1.1 37040 1nnlA 225 2.65e+01 c.108.1.4 85906 3psg 370 2.69e+01 1smrA b.50.1.2 26841 1kutA 230 2.74e+01 d.143.1.1 73017 1ej1A 190 2.76e+01 1ejhA d.86.1.1 40144 3tss 194 2.76e+01 1aw7A b.40.2.2 25160 d.15.6.1 37749 1obr 326 2.82e+01 1aye c.56.5.2 33828 1h16A 759 2.84e+01 c.7.1.1 76462 1ru3A 732 2.85e+01 1r4wA 226 2.88e+01 1ezfA 340 2.98e+01 1ezfA a.128.1.2 19440 1bwzA 274 2.98e+01 1bwzA d.21.1.1 38337 d.21.1.1 38338 1gqzA 274 3.04e+01 d.21.1.1 83311 d.21.1.1 83312 1p3jA 217 3.16e+01 1osdA 72 3.21e+01 1s8iA 121 3.25e+01 1g72A 573 3.29e+01 4aahA b.70.1.1 27680 1f52A 468 3.34e+01 1lgr d.15.9.1 37839 d.128.1.1 41169 1g73A 162 3.35e+01 1fewA a.7.4.1 16332 1c9oA 66 3.40e+01 1mjc b.40.4.5 25325 3lynA 136 3.41e+01 1lis a.19.1.1 16413 1utcA 363 3.46e+01 1f2tA 149 3.72e+01 1f2tA c.37.1.12 32373 6mhtA 327 3.74e+01 6mhtA c.66.1.26 34226 1uzxA 169 3.80e+01 1iznA 286 3.86e+01 e.43.1.1 83847 1r4vA 171 3.87e+01 1pujA 282 3.94e+01 c.37.1.8 88294