PFRMAT RR TARGET T0200 AUTHOR 4204-4258-2837 REMARK From group SAM-TO4-hand under the direction of REMARK Kevin Karplus. REMARK Project by George Shackelford and Kevin Karplus REMARK The value given is an approximation of the probability REMARK as provided by the neural network. REMARK The number of predictions is limited to .5*sequence_length REMARK or to a limited set of high scoring pairs. REMARK METHOD The predictor is an artificial neural network METHOD using 280 inputs. METHOD Input includes separation and sequence length, corrected METHOD mutual information between columns (M. Cline) and METHOD an e-value measure of correlation between columns (K Karplus) METHOD NN: NN280-240n300.net.28 METHOD Other inputs are from alignments and METHOD secondary predictions from SAM-t2k and SAM-t04 of METHOD University of California, Santa Cruz MODEL 1 MRVLFIGDVFGQPGRRVLQNHLPTIRPQFDFVIVNMENSAGGFGMHRDAA RGALEAGAGCLTLGNHAWHHKDIYPMLSEDTYPIVRPLNYADPGTPGVGW RTFDVNGEKLTVVNLLGRVFMEAVDNPFRTMDALLERDDLGTVFVDFHAE ATSEKEAMGWHLAGRVAAVIGTHTHVPTADTRILKGGTAYQTDAGFTGPH DSIIGSAIEGPLQRFLTERPHRYGVAEGRAELNGVALHFEGGKATAAERY RFIED 5 35 0 8 0.6154 5 36 0 8 0.6528 5 37 0 8 0.65025 5 53 0 8 0.47685 5 61 0 8 0.60775 5 64 0 8 0.6052 5 67 0 8 0.45645 5 89 0 8 0.4131 5 147 0 8 0.6239 5 149 0 8 0.48705 5 151 0 8 0.6137 5 172 0 8 0.4182 5 174 0 8 0.4743 5 176 0 8 0.4267 6 35 0 8 0.43435 6 36 0 8 0.7327 6 37 0 8 0.663 6 38 0 8 0.51935 6 58 0 8 0.7174 6 64 0 8 0.46665 6 67 0 8 0.4369 6 68 0 8 0.47685 6 89 0 8 0.4692 6 146 0 8 0.6035 6 149 0 8 0.4437 6 174 0 8 0.4488 6 191 0 8 0.5525 7 31 0 8 0.595 7 36 0 8 0.5729 7 37 0 8 0.58395 7 67 0 8 0.4012 7 147 0 8 0.57035 7 149 0 8 0.4794 7 151 0 8 0.5338 7 171 0 8 0.57035 7 192 0 8 0.57715 7 193 0 8 0.5967 7 194 0 8 0.63325 7 200 0 8 0.4318 8 173 0 8 0.4641 9 37 0 8 0.6409 10 36 0 8 0.5406 10 37 0 8 0.5814 10 38 0 8 0.61965 10 39 0 8 0.4131 10 64 0 8 0.61965 10 68 0 8 0.4692 10 88 0 8 0.4845 10 89 0 8 0.6052 10 114 0 8 0.6052 11 36 0 8 0.4743 11 37 0 8 0.60095 11 38 0 8 0.5661 11 64 0 8 0.53125 11 84 0 8 0.59245 11 89 0 8 0.70465 11 198 0 8 0.4437 13 46 0 8 0.4012 15 37 0 8 0.40885 15 38 0 8 0.50405 18 113 0 8 0.5814 19 46 0 8 0.4539 20 37 0 8 0.40375 21 38 0 8 0.4233 25 120 0 8 0.41565 31 64 0 8 0.43435 31 89 0 8 0.4233 31 113 0 8 0.43945 31 174 0 8 0.42075 31 176 0 8 0.46665 31 200 0 8 0.43435 32 64 0 8 0.5814 32 67 0 8 0.44625 32 89 0 8 0.4998 32 114 0 8 0.4233 32 174 0 8 0.46665 33 49 0 8 0.42075 33 68 0 8 0.5168 33 174 0 8 0.42925 34 54 0 8 0.40885 34 61 0 8 0.50235 34 64 0 8 0.56355 34 89 0 8 0.5117 34 172 0 8 0.5593 34 174 0 8 0.50915 34 176 0 8 0.4182 34 192 0 8 0.46155 34 194 0 8 0.4012 35 53 0 8 0.6715 35 58 0 8 0.49725 35 62 0 8 0.43945 35 64 0 8 0.6528 35 89 0 8 0.5729 35 171 0 8 0.5287 35 172 0 8 0.50405 35 174 0 8 0.4692 35 192 0 8 0.4267 36 45 0 8 0.4743 36 46 0 8 0.6545 36 64 0 8 0.6613 36 67 0 8 0.6579 36 68 0 8 0.63325 36 84 0 8 0.43435 36 89 0 8 0.663 36 115 0 8 0.5168 36 147 0 8 0.4182 36 149 0 8 0.49215 36 162 0 8 0.6052 36 171 0 8 0.44115 36 172 0 8 0.6239 36 174 0 8 0.44115 36 176 0 8 0.50235 36 192 0 8 0.5355 36 193 0 8 0.49215 36 194 0 8 0.4369 36 197 0 8 0.4012 36 198 0 8 0.53125 37 46 0 8 0.6528 37 55 0 8 0.42925 37 63 0 8 0.68 37 64 0 8 0.5457 37 67 0 8 0.7072 37 68 0 8 0.4998 37 82 0 8 0.55505 37 83 0 8 0.5117 37 84 0 8 0.47175 37 88 0 8 0.5967 37 90 0 8 0.4692 37 91 0 8 0.43435 37 114 0 8 0.50235 37 146 0 8 0.5117 37 147 0 8 0.6596 37 148 0 8 0.4233 37 149 0 8 0.4131 37 151 0 8 0.5117 37 163 0 8 0.46155 37 166 0 8 0.48705 37 172 0 8 0.459 37 174 0 8 0.42925 37 177 0 8 0.4267 37 192 0 8 0.56865 37 193 0 8 0.50915 37 194 0 8 0.4641 37 197 0 8 0.4233 37 198 0 8 0.55675 37 199 0 8 0.62985 37 200 0 8 0.68 37 201 0 8 0.5236 38 54 0 8 0.57545 38 63 0 8 0.5814 38 64 0 8 0.6732 38 67 0 8 0.5355 38 68 0 8 0.71995 38 82 0 8 0.52615 38 83 0 8 0.4267 38 84 0 8 0.5219 38 88 0 8 0.70295 38 89 0 8 0.6562 38 90 0 8 0.69445 38 100 0 8 0.5117 38 131 0 8 0.6222 38 145 0 8 0.4947 38 146 0 8 0.51425 38 147 0 8 0.6035 38 172 0 8 0.6035 38 173 0 8 0.54995 38 174 0 8 0.63155 38 191 0 8 0.47175 38 192 0 8 0.40375 38 193 0 8 0.48705 38 198 0 8 0.6256 38 199 0 8 0.6137 38 200 0 8 0.5474 38 201 0 8 0.4896 39 89 0 8 0.5525 39 151 0 8 0.43945 39 172 0 8 0.40885 40 88 0 8 0.42925 54 67 0 8 0.4488 54 68 0 8 0.5474 54 82 0 8 0.4063 54 88 0 8 0.4063 54 89 0 8 0.51425 54 114 0 8 0.43435 54 172 0 8 0.47175 58 189 0 8 0.4182 61 89 0 8 0.4743 61 113 0 8 0.4012 61 147 0 8 0.4794 61 174 0 8 0.41565 61 176 0 8 0.40375 61 189 0 8 0.4131 62 146 0 8 0.5355 62 174 0 8 0.53805 63 88 0 8 0.7225 63 114 0 8 0.43435 63 172 0 8 0.46665 64 82 0 8 0.4947 64 83 0 8 0.459 64 84 0 8 0.6409 64 86 0 8 0.5814 64 89 0 8 0.6698 64 115 0 8 0.4794 64 120 0 8 0.41565 64 134 0 8 0.47685 64 146 0 8 0.60095 64 149 0 8 0.60775 64 166 0 8 0.50235 64 172 0 8 0.6409 64 174 0 8 0.62985 64 194 0 8 0.4437 64 197 0 8 0.5474 64 198 0 8 0.4012 64 202 0 8 0.4012 67 82 0 8 0.4794 67 83 0 8 0.53125 67 84 0 8 0.5967 67 88 0 8 0.6715 67 89 0 8 0.57545 67 127 0 8 0.4488 67 172 0 8 0.6664 67 174 0 8 0.5729 67 199 0 8 0.51425 67 200 0 8 0.6545 68 82 0 8 0.6783 68 83 0 8 0.5474 68 84 0 8 0.612 68 89 0 8 0.68765 68 90 0 8 0.47685 68 127 0 8 0.4743 68 146 0 8 0.40375 68 172 0 8 0.56865 68 197 0 8 0.5117 68 198 0 8 0.5882 68 199 0 8 0.5882 68 200 0 8 0.49215 69 196 0 8 0.40885 76 150 0 8 0.4641 76 192 0 8 0.48705 76 193 0 8 0.48195 76 194 0 8 0.4182 77 192 0 8 0.6035 84 115 0 8 0.44625 84 192 0 8 0.5967 84 193 0 8 0.4318 84 198 0 8 0.4896 86 172 0 8 0.54315 88 174 0 8 0.4896 88 193 0 8 0.42925 89 100 0 8 0.4369 89 113 0 8 0.6375 89 115 0 8 0.6613 89 146 0 8 0.48705 89 147 0 8 0.4063 89 162 0 8 0.5525 89 166 0 8 0.5729 89 172 0 8 0.50405 89 174 0 8 0.59245 89 176 0 8 0.4012 89 191 0 8 0.5967 89 192 0 8 0.57715 89 194 0 8 0.48195 89 197 0 8 0.4012 89 198 0 8 0.4437 89 199 0 8 0.45135 89 200 0 8 0.50405 90 146 0 8 0.42925 111 140 0 8 0.5865 113 143 0 8 0.41055 113 146 0 8 0.4641 113 151 0 8 0.62815 113 174 0 8 0.5117 113 191 0 8 0.4233 114 149 0 8 0.42075 114 150 0 8 0.43945 114 172 0 8 0.62815 115 149 0 8 0.6052 115 151 0 8 0.51425 116 150 0 8 0.64855 145 166 0 8 0.64345 145 172 0 8 0.51425 145 174 0 8 0.4437 146 167 0 8 0.54315 146 172 0 8 0.53125 146 191 0 8 0.42925 147 166 0 8 0.4063 147 169 0 8 0.5474 149 162 0 8 0.4437 149 166 0 8 0.50405 149 174 0 8 0.41565 149 192 0 8 0.5168 149 193 0 8 0.40375 149 194 0 8 0.5525 149 196 0 8 0.42075 149 197 0 8 0.4063 150 161 0 8 0.51425 150 193 0 8 0.56355 151 174 0 8 0.4845 151 176 0 8 0.5355 151 177 0 8 0.4318 151 192 0 8 0.5117 151 194 0 8 0.46665 155 194 0 8 0.4012 155 197 0 8 0.41055 156 193 0 8 0.4369 162 192 0 8 0.59075 162 197 0 8 0.5593 166 192 0 8 0.459 172 184 0 8 0.42075 174 192 0 8 0.5797 174 193 0 8 0.44625 174 194 0 8 0.4488 174 196 0 8 0.57545 174 197 0 8 0.5814 174 198 0 8 0.5814 176 192 0 8 0.44115 176 194 0 8 0.44625 176 199 0 8 0.42075 177 192 0 8 0.46155 177 193 0 8 0.52615 178 192 0 8 0.5168 178 193 0 8 0.459 178 199 0 8 0.4318 END