# List of top-scoring protein chains for T0199.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1j5yA 187 4.01e-02 a.4.5.1 71592 d.94.2.1 71593 1mkmA 249 4.52e-02 a.4.5.33 79242 d.110.2.2 79243 1i1gA 141 1.91e-01 a.4.5.32 65982 d.58.4.2 65983 1l1zA 274 5.48e-01 a.156.1.2 75911 b.113.1.1 75912 g.39.1.8 75913 1r2zA 274 5.82e-01 1hqcA 324 6.02e-01 1hqcA a.4.5.11 16127 c.37.1.20 32424 1ri7A 171 1.36e+00 1j7kA 334 2.40e+00 1hqcA a.4.5.11 62695 c.37.1.20 62696 1in5A 334 3.00e+00 1hqcA a.4.5.11 62599 c.37.1.20 62600 1in8A 334 3.03e+00 1hqcA a.4.5.11 62605 c.37.1.20 62606 1in4A 334 3.05e+00 1hqcA a.4.5.11 62597 c.37.1.20 62598 1fseA 74 3.14e+00 1fseA a.4.6.2 60000 1in6A 334 3.15e+00 1hqcA a.4.5.11 62601 c.37.1.20 62602 1ku9A 152 3.32e+00 a.4.5.36 77544 1in7A 334 3.84e+00 1hqcA a.4.5.11 62603 c.37.1.20 62604 1dhkA 496 4.79e+00 1smd b.71.1.1 27761 c.1.8.1 28748 1kguA 496 5.05e+00 b.71.1.1 68598 c.1.8.1 68599 1ose 496 5.43e+00 1smd b.71.1.1 27766 c.1.8.1 28753 1hw1A 239 5.53e+00 1e2xA a.4.5.6 16111 a.78.1.1 18441 1e2xA 243 5.56e+00 1e2xA a.4.5.6 16113 a.78.1.1 18443 1jfh 496 5.62e+00 1smd b.71.1.1 27762 c.1.8.1 28749 1kxqA 496 5.91e+00 b.71.1.1 73163 c.1.8.1 73164 1hx0A 496 6.04e+00 b.71.1.1 61346 c.1.8.1 61347 1bvnP 496 6.33e+00 1smd b.71.1.1 27767 c.1.8.1 28754 1fc4A 401 6.63e+00 1bs0A c.67.1.4 59760 1ppi 496 6.67e+00 1smd b.71.1.1 27763 c.1.8.1 28750 1jaw 440 6.83e+00 1az9 c.55.2.1 33549 d.127.1.1 41166 1az9 440 6.85e+00 1az9 c.55.2.1 33547 d.127.1.1 41164 1s3jA 155 6.94e+00 1pig 496 7.10e+00 1smd b.71.1.1 27764 c.1.8.1 28751 1j75A 67 7.24e+00 a.4.5.19 62673 1h71P 463 7.60e+00 b.79.1.1 76704 d.92.1.6 76705 1g9kA 463 7.62e+00 b.79.1.1 76217 d.92.1.6 76218 2cpuA 496 8.23e+00 1smd b.71.1.1 63334 c.1.8.1 63335 1kbbA 496 1.02e+01 b.71.1.1 72275 c.1.8.1 72276 1kb3A 496 1.08e+01 b.71.1.1 72269 c.1.8.1 72270 1kgxA 496 1.13e+01 b.71.1.1 68602 c.1.8.1 68603 1hny 496 1.17e+01 1smd b.71.1.1 27769 c.1.8.1 28756 1je8A 82 1.17e+01 a.4.6.2 77108 1asyA 490 1.18e+01 1b8aA b.40.4.1 25242 d.104.1.1 40763 1eovA 487 1.18e+01 1b8aA b.40.4.1 25239 d.104.1.1 40760 1dljA 402 1.18e+01 1dliA a.100.1.4 18808 c.2.1.6 30212 c.26.3.1 31621 1k2yX 463 1.19e+01 c.84.1.1 68063 c.84.1.1 68064 c.84.1.1 68065 d.129.2.1 68066 1kbkA 496 1.24e+01 b.71.1.1 72282 c.1.8.1 72283 1iirA 415 1.26e+01 1iirA c.87.1.5 62453 1kgwA 496 1.28e+01 b.71.1.1 68600 c.1.8.1 68601 1o5lA 213 1.30e+01 1t7pA 698 1.30e+01 1t7pA c.55.3.5 33712 e.8.1.1 43005 1p58A 495 1.32e+01 1p5dX 463 1.33e+01 1qydA 313 1.40e+01 1gjwA 637 1.50e+01 b.71.1.1 60582 c.1.8.1 60583 1ixsB 318 1.51e+01 a.4.5.11 76933 c.37.1.20 76934 1moxA 501 1.60e+01 1jlwA 219 1.69e+01 a.45.1.1 71741 c.47.1.5 71742 1jyoA 130 1.70e+01 d.198.1.1 67483 1okrA 123 1.82e+01 1sd6A 123 1.85e+01 1hgwA 365 1.85e+01 c.6.1.1 65831 1frn 314 2.04e+01 1fnc b.43.4.2 25631 c.25.1.1 31521 1fnd 314 2.11e+01 1fnc b.43.4.2 25626 c.25.1.1 31516 1nqfA 594 2.30e+01 f.4.3.3 86028 1bx1A 314 2.33e+01 1fnc b.43.4.2 25629 c.25.1.1 31519 1nqlA 624 2.37e+01 c.10.2.5 86033 c.10.2.5 86034 g.3.9.1 86035 g.3.9.1 86036 1jhfA 202 2.38e+01 a.4.5.2 63057 b.87.1.1 63058 1ivoA 622 2.39e+01 c.10.2.5 76845 c.10.2.5 76846 g.3.9.1 76847 g.3.9.1 76848 2pia 321 2.41e+01 2pia b.43.4.2 25663 c.25.1.2 31553 d.15.4.2 37704 1l6wA 220 2.42e+01 c.1.10.1 73632 1bx0A 314 2.44e+01 1fnc b.43.4.2 25630 c.25.1.1 31520 1ji3A 388 2.47e+01 c.69.1.18 77115 1frqA 314 2.50e+01 1fnc b.43.4.2 25632 c.25.1.1 31522 1gehA 444 2.61e+01 c.1.14.1 65181 d.58.9.1 65182 1nm9A 496 2.66e+01 1dliA 402 2.67e+01 1dliA a.100.1.4 18809 c.2.1.6 30213 c.26.3.1 31622 1jx6A 342 2.75e+01 c.93.1.1 67406 1jxjA 496 2.94e+01 b.71.1.1 63314 c.1.8.1 63315 1e63A 304 2.95e+01 1fnc b.43.4.2 59287 c.25.1.1 59288 1mzbA 136 2.97e+01 1q4nX 496 2.98e+01 1ku0A 388 2.99e+01 c.69.1.18 72994 1smd 496 2.99e+01 1smd b.71.1.1 27768 c.1.8.1 28755 1rliA 184 3.08e+01 1e0uA 470 3.20e+01 1a49A b.58.1.1 27072 c.1.12.1 29300 c.49.1.1 33154 1onoA 398 3.21e+01 a.69.3.1 87159 c.2.1.3 87160 d.81.1.3 87161 1jvsA 400 3.21e+01 a.69.3.1 77187 c.2.1.3 77188 d.81.1.3 77189 1bjk 295 3.23e+01 1fnc b.43.4.2 25649 c.25.1.1 31539 1qf9A 194 3.24e+01 1zin c.37.1.1 31848 1e62A 304 3.27e+01 1fnc b.43.4.2 59285 c.25.1.1 59286 1fp2A 352 3.28e+01 1fpxA a.4.5.29 59941 c.66.1.12 59942 1qgjA 300 3.28e+01 1bgp a.93.1.1 18691 1ukz 203 3.28e+01 1zin c.37.1.1 31840 1vhoA 346 3.31e+01 1dpjA 329 3.33e+01 1smrA b.50.1.2 26828 1que 303 3.33e+01 1fnc b.43.4.2 25647 c.25.1.1 31537 1gjrA 304 3.34e+01 b.43.4.2 70197 c.25.1.1 70198 2jxrA 329 3.34e+01 1smrA b.50.1.2 26831 1b2rA 304 3.37e+01 1fnc b.43.4.2 25648 c.25.1.1 31538 1pkyA 470 3.37e+01 1a49A b.58.1.1 27068 c.1.12.1 29296 c.49.1.1 33150 1qk2A 363 3.38e+01 1bvwA c.6.1.1 30659 1e64A 304 3.38e+01 1fnc b.43.4.2 59289 c.25.1.1 59290 3cbh 365 3.38e+01 1bvwA c.6.1.1 30665 1qh0A 295 3.38e+01 b.43.4.2 68891 c.25.1.1 68892 1us3A 530 3.44e+01 1e0tA 470 3.45e+01 1a49A b.58.1.1 27064 c.1.12.1 29292 c.49.1.1 33146 1jfsA 340 3.47e+01 a.35.1.5 66650 c.93.1.1 66651 1dzaA 129 3.49e+01 7rsa d.5.1.1 37275 1h85A 295 3.54e+01 b.43.4.2 65716 c.25.1.1 65717 1h8xA 128 3.59e+01 d.5.1.1 65739 1qgyA 295 3.60e+01 1nstA 325 3.65e+01 1nstA c.37.1.5 31951 1jxkA 491 3.65e+01 b.71.1.1 63316 c.1.8.1 63317 1ogjA 303 3.66e+01 1gr1A 303 3.66e+01 b.43.4.2 76319 c.25.1.1 76320 1jhhA 202 3.68e+01 a.4.5.2 63060 b.87.1.1 63061 1quf 304 3.70e+01 1fnc b.43.4.2 25650 c.25.1.1 31540 1rjdA 334 3.74e+01 2pugA 340 3.77e+01 1qpzA a.35.1.5 17088 c.93.1.1 35683 1tml 286 3.84e+01 1tml c.6.1.1 30656 1jh9A 340 3.85e+01 a.35.1.5 66710 c.93.1.1 66711 1go2A 304 3.90e+01 b.43.4.2 76243 c.25.1.1 76244 1ewyA 303 3.91e+01 1fnc b.43.4.2 25651 c.25.1.1 31541 1ab4 493 3.94e+01 1ab4 e.11.1.1 43251 1qtrA 317 3.97e+01 1qtrA c.69.1.7 34660 1qjwA 365 3.99e+01 1bvwA c.6.1.1 30657