CreatePredAlphaCost pred_alpha2k alpha11 T0198.t2k.alpha.rdb 2 alpha alpha_prev min CreatePredAlphaCost pred_alpha04 alpha11 T0198.t04.alpha.rdb 2 alpha alpha_prev min SetCost wet6.5 15 near_backbone 3 way_back 3 dry5 15 dry6.5 20 dry8 10 dry12 10 \ phobic_fit 4 \ sidechain 2 \ bystroff 5 \ soft_clashes 20 backbone_clashes 2 \ break 50 \ pred_alpha2k 8 \ pred_alpha04 8 \ hbond_geom 1 \ hbond_geom_backbone 2 \ hbond_geom_beta 1 \ hbond_geom_beta_pair 1 # The beta cost functions were down-weighted for this alpha-protein