CreatePredAlphaCost pred_alpha2k alpha11 T0198.t2k.alpha.rdb 2 alpha alpha_prev min CreatePredAlphaCost pred_alpha04 alpha11 T0198.t04.alpha.rdb 2 alpha alpha_prev min SetCost wet6.5 15 near_backbone 6 way_back 6 dry5 15 dry6.5 20 dry8 10 dry12 10 \ phobic_fit 3 \ sidechain 2 \ bystroff 10 \ soft_clashes 10 backbone_clashes 3 \ break 30 \ pred_alpha2k 6 \ pred_alpha04 2 \ constraints 30 \ hbond_geom 0.5 \ hbond_geom_backbone 1 # The beta cost functions were removed for this alpha-protein HelixConstraint L4 V35 20 HelixConstraint S40 L69 20 HelixConstraint P76 M108 20 HelixConstraint P115 D139 20 HelixConstraint V142 M171 20 HelixConstraint K175 M207 30 HelixConstraint D218 F223 20