# TARGET T0198 # Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net # This is a 4-layer network, with # window units # 5 15 # 7 15 # 9 15 # 13 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0198.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(-1 bits/column, 1) # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 190 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.003 0.001 0.003 0.564 0.048 0.381 2 N 0.006 0.002 0.008 0.849 0.025 0.109 3 R 0.010 0.004 0.022 0.895 0.026 0.042 4 L 0.015 0.004 0.049 0.838 0.047 0.046 5 L 0.018 0.002 0.023 0.807 0.065 0.086 6 N 0.017 0.003 0.016 0.794 0.088 0.081 7 E 0.006 0.001 0.018 0.823 0.086 0.065 8 K 0.004 0.002 0.013 0.874 0.045 0.062 9 V 0.003 0.001 0.009 0.875 0.041 0.071 10 E 0.001 0.001 0.004 0.911 0.033 0.051 11 E 0.001 0.001 0.006 0.941 0.020 0.032 12 F 0.001 0.001 0.005 0.963 0.013 0.019 13 K 0.001 0.001 0.003 0.978 0.010 0.008 14 K 0.001 0.001 0.003 0.974 0.014 0.010 15 G 0.001 0.001 0.005 0.979 0.009 0.006 16 V 0.001 0.001 0.004 0.982 0.007 0.006 17 L 0.001 0.001 0.008 0.973 0.010 0.008 18 K 0.001 0.001 0.006 0.968 0.011 0.014 19 A 0.001 0.001 0.004 0.974 0.006 0.015 20 G 0.001 0.001 0.003 0.981 0.005 0.010 21 W 0.001 0.001 0.004 0.981 0.006 0.009 22 F 0.001 0.001 0.005 0.981 0.005 0.007 23 I 0.001 0.001 0.002 0.990 0.003 0.004 24 E 0.001 0.001 0.001 0.994 0.003 0.003 25 K 0.001 0.001 0.001 0.992 0.003 0.004 26 M 0.001 0.001 0.001 0.993 0.003 0.003 27 F 0.001 0.001 0.001 0.994 0.002 0.002 28 R 0.001 0.001 0.001 0.994 0.003 0.002 29 N 0.001 0.001 0.001 0.991 0.003 0.005 30 S 0.001 0.001 0.001 0.989 0.003 0.007 31 I 0.001 0.001 0.001 0.996 0.002 0.002 32 S 0.001 0.001 0.002 0.993 0.003 0.001 33 S 0.001 0.001 0.004 0.989 0.005 0.002 34 L 0.001 0.001 0.008 0.978 0.010 0.004 35 V 0.001 0.001 0.013 0.956 0.023 0.007 36 E 0.001 0.001 0.012 0.806 0.096 0.085 37 R 0.001 0.002 0.008 0.219 0.242 0.528 38 N 0.001 0.004 0.003 0.108 0.110 0.774 39 E 0.001 0.001 0.012 0.888 0.058 0.041 40 S 0.001 0.001 0.016 0.931 0.041 0.012 41 L 0.001 0.001 0.014 0.950 0.026 0.009 42 A 0.001 0.001 0.005 0.981 0.008 0.005 43 R 0.001 0.001 0.003 0.980 0.010 0.005 44 E 0.001 0.001 0.004 0.977 0.011 0.007 45 V 0.001 0.001 0.003 0.963 0.015 0.016 46 I 0.001 0.001 0.005 0.952 0.022 0.018 47 A 0.002 0.001 0.006 0.914 0.031 0.047 48 D 0.001 0.001 0.004 0.936 0.018 0.041 49 E 0.001 0.001 0.005 0.972 0.011 0.011 50 E 0.001 0.001 0.006 0.972 0.012 0.010 51 V 0.001 0.001 0.005 0.975 0.008 0.011 52 V 0.001 0.001 0.001 0.995 0.002 0.002 53 D 0.001 0.001 0.001 0.994 0.002 0.003 54 Q 0.001 0.001 0.001 0.997 0.001 0.001 55 M 0.001 0.001 0.001 0.997 0.001 0.002 56 E 0.001 0.001 0.001 0.999 0.001 0.001 57 V 0.001 0.001 0.001 0.999 0.001 0.001 58 E 0.001 0.001 0.001 0.999 0.001 0.001 59 I 0.001 0.001 0.001 0.998 0.001 0.001 60 Q 0.001 0.001 0.001 0.998 0.001 0.001 61 E 0.001 0.001 0.001 0.997 0.001 0.001 62 K 0.001 0.001 0.001 0.995 0.002 0.003 63 A 0.001 0.001 0.001 0.996 0.001 0.003 64 M 0.001 0.001 0.001 0.996 0.001 0.002 65 E 0.001 0.001 0.001 0.995 0.002 0.002 66 V 0.001 0.001 0.001 0.993 0.004 0.002 67 L 0.001 0.001 0.001 0.988 0.005 0.005 68 G 0.001 0.001 0.006 0.966 0.016 0.012 69 L 0.001 0.001 0.007 0.935 0.028 0.030 70 F 0.002 0.001 0.005 0.603 0.115 0.274 71 S 0.005 0.005 0.006 0.121 0.222 0.642 72 P 0.008 0.008 0.017 0.087 0.314 0.566 73 I 0.008 0.008 0.041 0.143 0.343 0.458 74 G 0.005 0.003 0.124 0.301 0.344 0.223 75 K 0.004 0.003 0.109 0.381 0.236 0.267 76 P 0.003 0.004 0.080 0.641 0.096 0.176 77 L 0.001 0.001 0.010 0.972 0.009 0.008 78 L 0.001 0.001 0.004 0.986 0.006 0.004 79 T 0.001 0.001 0.002 0.994 0.002 0.001 80 V 0.001 0.001 0.001 0.998 0.001 0.001 81 T 0.001 0.001 0.001 0.998 0.001 0.001 82 A 0.001 0.001 0.001 0.998 0.001 0.001 83 G 0.001 0.001 0.001 0.998 0.001 0.001 84 I 0.001 0.001 0.001 0.997 0.001 0.001 85 R 0.001 0.001 0.001 0.993 0.002 0.004 86 V 0.001 0.001 0.001 0.991 0.002 0.005 87 A 0.001 0.001 0.001 0.994 0.002 0.003 88 E 0.001 0.001 0.003 0.956 0.012 0.029 89 L 0.001 0.001 0.006 0.961 0.012 0.021 90 I 0.001 0.001 0.005 0.979 0.009 0.007 91 E 0.001 0.001 0.004 0.975 0.012 0.009 92 N 0.001 0.001 0.003 0.944 0.015 0.036 93 I 0.001 0.001 0.001 0.977 0.003 0.018 94 A 0.001 0.001 0.001 0.994 0.002 0.003 95 D 0.001 0.001 0.001 0.994 0.003 0.002 96 K 0.001 0.001 0.001 0.997 0.002 0.001 97 C 0.001 0.001 0.001 0.996 0.002 0.001 98 H 0.001 0.001 0.001 0.998 0.001 0.001 99 D 0.001 0.001 0.001 0.997 0.002 0.001 100 I 0.001 0.001 0.001 0.996 0.002 0.002 101 A 0.001 0.001 0.001 0.990 0.005 0.004 102 K 0.001 0.001 0.001 0.989 0.005 0.004 103 N 0.001 0.001 0.001 0.988 0.006 0.004 104 V 0.001 0.001 0.002 0.986 0.006 0.006 105 L 0.001 0.001 0.007 0.967 0.014 0.011 106 E 0.001 0.001 0.011 0.946 0.024 0.017 107 L 0.002 0.002 0.012 0.894 0.039 0.051 108 M 0.003 0.003 0.026 0.559 0.202 0.208 109 E 0.003 0.002 0.030 0.250 0.336 0.379 110 E 0.004 0.005 0.039 0.117 0.423 0.412 111 P 0.006 0.012 0.035 0.099 0.418 0.430 112 P 0.007 0.004 0.032 0.143 0.283 0.531 113 L 0.007 0.005 0.081 0.353 0.276 0.279 114 K 0.005 0.004 0.089 0.470 0.224 0.208 115 P 0.004 0.003 0.058 0.716 0.099 0.120 116 L 0.004 0.002 0.031 0.810 0.070 0.082 117 E 0.002 0.002 0.017 0.879 0.042 0.056 118 D 0.001 0.002 0.018 0.927 0.016 0.035 119 I 0.001 0.001 0.004 0.980 0.004 0.011 120 P 0.001 0.001 0.003 0.989 0.003 0.005 121 A 0.001 0.001 0.002 0.992 0.002 0.003 122 M 0.001 0.001 0.002 0.995 0.002 0.002 123 A 0.001 0.001 0.001 0.996 0.001 0.001 124 N 0.001 0.001 0.001 0.995 0.002 0.002 125 Q 0.001 0.001 0.001 0.992 0.003 0.004 126 T 0.001 0.001 0.001 0.992 0.002 0.005 127 S 0.001 0.001 0.001 0.995 0.002 0.003 128 E 0.001 0.001 0.001 0.995 0.002 0.002 129 M 0.001 0.001 0.001 0.995 0.002 0.002 130 L 0.001 0.001 0.001 0.997 0.001 0.001 131 K 0.001 0.001 0.001 0.998 0.001 0.001 132 F 0.001 0.001 0.001 0.997 0.001 0.002 133 A 0.001 0.001 0.001 0.997 0.001 0.002 134 L 0.001 0.001 0.001 0.997 0.001 0.001 135 R 0.001 0.001 0.002 0.995 0.002 0.001 136 M 0.001 0.001 0.004 0.991 0.003 0.002 137 F 0.001 0.001 0.006 0.981 0.008 0.004 138 A 0.001 0.001 0.015 0.943 0.028 0.013 139 D 0.002 0.001 0.013 0.625 0.169 0.189 140 V 0.004 0.005 0.005 0.109 0.246 0.632 141 N 0.002 0.005 0.001 0.038 0.105 0.848 142 V 0.001 0.001 0.013 0.937 0.035 0.015 143 E 0.001 0.001 0.011 0.967 0.018 0.003 144 K 0.001 0.001 0.009 0.975 0.013 0.003 145 S 0.001 0.001 0.002 0.991 0.003 0.003 146 F 0.001 0.001 0.001 0.996 0.002 0.001 147 E 0.001 0.001 0.001 0.996 0.003 0.001 148 V 0.001 0.001 0.001 0.994 0.003 0.003 149 C 0.001 0.001 0.001 0.995 0.002 0.002 150 R 0.001 0.001 0.001 0.990 0.003 0.006 151 M 0.001 0.001 0.001 0.994 0.001 0.004 152 D 0.001 0.001 0.001 0.998 0.001 0.001 153 S 0.001 0.001 0.001 0.999 0.001 0.001 154 K 0.001 0.001 0.001 0.999 0.001 0.001 155 V 0.001 0.001 0.001 0.999 0.001 0.001 156 D 0.001 0.001 0.001 0.999 0.001 0.001 157 D 0.001 0.001 0.001 0.999 0.001 0.001 158 L 0.001 0.001 0.001 0.997 0.001 0.002 159 Y 0.001 0.001 0.001 0.994 0.002 0.004 160 E 0.001 0.001 0.001 0.994 0.002 0.004 161 K 0.001 0.001 0.001 0.994 0.003 0.003 162 V 0.001 0.001 0.001 0.994 0.002 0.003 163 R 0.001 0.001 0.001 0.986 0.005 0.008 164 E 0.001 0.001 0.001 0.993 0.003 0.003 165 E 0.001 0.001 0.001 0.990 0.004 0.005 166 L 0.001 0.001 0.001 0.992 0.003 0.004 167 L 0.001 0.001 0.003 0.992 0.002 0.002 168 L 0.001 0.001 0.005 0.988 0.004 0.003 169 Y 0.001 0.001 0.011 0.981 0.005 0.002 170 M 0.001 0.001 0.011 0.977 0.007 0.003 171 M 0.001 0.001 0.019 0.950 0.021 0.008 172 E 0.001 0.001 0.016 0.729 0.132 0.121 173 S 0.001 0.001 0.013 0.120 0.455 0.410 174 P 0.002 0.004 0.041 0.159 0.582 0.212 175 K 0.002 0.009 0.045 0.172 0.567 0.205 176 Y 0.005 0.010 0.044 0.314 0.310 0.316 177 V 0.001 0.001 0.016 0.946 0.022 0.015 178 K 0.002 0.001 0.011 0.958 0.017 0.011 179 R 0.002 0.001 0.012 0.971 0.009 0.005 180 A 0.002 0.001 0.007 0.981 0.005 0.004 181 L 0.002 0.001 0.005 0.981 0.007 0.005 182 L 0.001 0.001 0.003 0.987 0.004 0.005 183 L 0.001 0.001 0.001 0.993 0.002 0.003 184 L 0.001 0.001 0.001 0.993 0.002 0.003 185 E 0.001 0.001 0.002 0.989 0.003 0.005 186 I 0.001 0.001 0.002 0.990 0.003 0.004 187 A 0.001 0.001 0.001 0.994 0.002 0.003 188 G 0.001 0.001 0.002 0.978 0.006 0.013 189 N 0.001 0.001 0.002 0.981 0.005 0.011 190 I 0.001 0.001 0.002 0.989 0.003 0.005 191 E 0.001 0.001 0.003 0.981 0.007 0.008 192 I 0.001 0.001 0.004 0.949 0.015 0.031 193 I 0.001 0.001 0.002 0.979 0.007 0.012 194 A 0.001 0.001 0.010 0.959 0.023 0.008 195 D 0.001 0.001 0.019 0.933 0.036 0.010 196 Y 0.001 0.001 0.031 0.908 0.049 0.011 197 A 0.001 0.001 0.014 0.887 0.070 0.027 198 T 0.002 0.001 0.004 0.883 0.043 0.066 199 N 0.006 0.002 0.005 0.820 0.056 0.112 200 I 0.008 0.002 0.008 0.941 0.019 0.023 201 V 0.028 0.002 0.022 0.879 0.037 0.032 202 E 0.025 0.001 0.025 0.897 0.028 0.024 203 V 0.045 0.001 0.022 0.876 0.035 0.021 204 S 0.046 0.001 0.006 0.905 0.023 0.018 205 V 0.183 0.003 0.006 0.755 0.028 0.025 206 Y 0.335 0.002 0.004 0.591 0.036 0.032 207 M 0.502 0.004 0.005 0.388 0.058 0.042 208 V 0.494 0.007 0.005 0.228 0.126 0.141 209 Q 0.261 0.005 0.005 0.116 0.273 0.340 210 G 0.153 0.006 0.004 0.023 0.320 0.494 211 E 0.334 0.034 0.004 0.015 0.164 0.450 212 A 0.546 0.036 0.004 0.010 0.090 0.314 213 Y 0.377 0.040 0.008 0.017 0.113 0.444 214 K 0.230 0.032 0.029 0.028 0.221 0.460 215 C 0.116 0.008 0.036 0.035 0.263 0.542 216 Y 0.079 0.015 0.018 0.022 0.246 0.619 217 H 0.039 0.016 0.011 0.022 0.213 0.699 218 D 0.039 0.016 0.028 0.057 0.241 0.618 219 E 0.050 0.034 0.089 0.099 0.327 0.400 220 L 0.036 0.011 0.116 0.095 0.418 0.323 221 L 0.038 0.009 0.111 0.108 0.487 0.247 222 L 0.039 0.014 0.076 0.152 0.445 0.274 223 F 0.067 0.030 0.068 0.201 0.399 0.236 224 K 0.129 0.034 0.072 0.216 0.360 0.190 225 K 0.112 0.022 0.050 0.228 0.371 0.216 226 S 0.093 0.017 0.054 0.206 0.441 0.189 227 G 0.047 0.004 0.027 0.123 0.511 0.289 228 G 0.081 0.011 0.017 0.053 0.412 0.426 229 V 0.273 0.039 0.016 0.057 0.215 0.401 230 L 0.411 0.024 0.027 0.073 0.132 0.333 231 F 0.635 0.025 0.048 0.051 0.092 0.149 232 E 0.459 0.012 0.061 0.047 0.163 0.258 233 S 0.261 0.010 0.046 0.038 0.214 0.432 234 S 0.112 0.026 0.010 0.021 0.123 0.708 235 D 0.001 0.002 0.001 0.001 0.016 0.979