# List of top-scoring protein chains for T0198.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1mfrA 176 1.02e+00 2fha a.25.1.1 16692 2sicI 107 2.76e+00 3ssi d.84.1.1 40031 3ssi 113 2.84e+00 3ssi d.84.1.1 40032 256bA 106 3.53e+00 256bA a.24.3.1 16539 1m6tA 106 4.19e+00 a.24.3.1 78705 1pnsP 83 5.52e+00 i.1.1.1 88183 1fjgP 88 5.74e+00 1emwA d.27.1.1 38444 1ml5S 91 6.01e+00 i.1.1.1 79274 1qq3A 106 7.37e+00 256bA a.24.3.1 16541 1lm3B 106 7.69e+00 a.24.3.1 74027 1l2tA 235 9.91e+00 c.37.1.12 73514 1f3oA 235 1.01e+01 1b0uA c.37.1.12 59631 3sicI 107 1.05e+01 3ssi d.84.1.1 40028 1k47A 337 1.06e+01 d.14.1.5 72040 d.58.26.4 72041 1r29A 127 1.22e+01 1a6q 382 1.26e+01 1a6q a.159.1.1 75801 d.219.1.1 75802 1aew 174 1.35e+01 2fha a.25.1.1 16676 1colA 204 1.38e+01 1a87 f.1.1.1 43378 1gwgA 174 1.41e+01 a.25.1.1 70669 1whe 86 1.49e+01 1edmB g.3.11.1 44242 g.32.1.1 44974 1dnyA 91 1.52e+01 1dnyA a.28.1.2 16934 1h67A 108 1.53e+01 a.40.1.1 65643 1q0gA 117 1.71e+01 1e0cA 271 1.77e+01 1e0cA c.46.1.2 32717 c.46.1.2 32718 1kt1A 457 1.85e+01 a.118.8.1 77528 d.26.1.1 77529 d.26.1.1 77530 1exaA 246 1.86e+01 2lbd a.123.1.1 19285 2lbd 267 1.88e+01 2lbd a.123.1.1 19287 1t5eA 360 1.89e+01 1vf7A 369 1.90e+01 1h6pA 203 2.04e+01 a.146.1.1 60690 1gcxA 774 2.83e+01 1tgoA c.55.3.5 33725 e.8.1.1 43014 1in5A 334 2.97e+01 1hqcA a.4.5.11 62599 c.37.1.20 62600 1iwkA 415 3.09e+01 a.104.1.1 71490 1dkfB 235 3.24e+01 2lbd a.123.1.1 19281 1c9bA 207 3.25e+01 1tfb a.74.1.2 18372 a.74.1.2 18373 1jzwA 139 3.27e+01 c.47.1.12 67883 1qkkA 155 3.27e+01 1dbwA c.23.1.1 31104 1l5zA 155 3.28e+01 c.23.1.1 77722 2rhe 114 3.29e+01 8fabA b.1.1.1 20523 1gebA 415 3.31e+01 1phd a.104.1.1 18932 1i9dA 141 3.34e+01 c.47.1.12 66098 1dz4A 414 3.36e+01 1phd a.104.1.1 18903 6cp4 414 3.39e+01 1phd a.104.1.1 18924 1tfb 208 3.40e+01 1tfb a.74.1.2 18382 a.74.1.2 18383 1j9bA 140 3.41e+01 c.47.1.12 66459 1phb 414 3.46e+01 1phd a.104.1.1 18906 1qmqA 414 3.46e+01 1phd a.104.1.1 18907 1gekA 415 3.47e+01 1phd a.104.1.1 18915 1lwlA 417 3.47e+01 a.104.1.1 78273 1t86A 414 3.47e+01 1p2yA 420 3.48e+01 1rmd 116 3.50e+01 1rmd g.37.1.1 45025 g.44.1.1 45322 2cp4 414 3.51e+01 1phd a.104.1.1 18933 1fd0A 235 3.54e+01 a.123.1.1 76164 1fcyA 236 3.54e+01 2lbd a.123.1.1 19282