# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1q0gA 117 8.12e-01 1nktA 922 8.70e-01 a.162.1.1 85830 a.172.1.1 85831 c.37.1.19 85832 c.37.1.19 85833 1oshA 232 9.16e-01 1v4eA 299 1.15e+00 1fcyA 236 1.35e+00 2lbd a.123.1.1 19282 256bA 106 1.38e+00 256bA a.24.3.1 16539 1h6gA 256 1.39e+00 1h6gA a.24.9.1 60669 a.24.9.1 60670 1ovlA 271 1.92e+00 a.123.1.1 87455 4lbd 267 2.14e+00 2lbd a.123.1.1 19289 1m6nA 802 2.34e+00 a.162.1.1 78697 a.172.1.1 78698 c.37.1.19 78699 c.37.1.19 78700 1i7gA 287 2.57e+00 a.123.1.1 71121 1vh6A 145 2.62e+00 1lf6A 684 2.97e+00 a.102.1.5 77918 b.30.5.5 77919 1aew 174 3.09e+00 2fha a.25.1.1 16676 1nubA 229 3.19e+00 1sra a.39.1.3 17191 g.3.11.3 44330 g.15.1.1 44715 2lbd 267 3.56e+00 2lbd a.123.1.1 19287 1ash 150 4.30e+00 1ash a.1.1.2 15622 1ka2A 499 4.45e+00 d.92.1.5 77305 1o0wA 252 4.48e+00 a.149.1.1 80751 d.50.1.1 80752 1un8A 552 4.82e+00 1dat 174 5.43e+00 2fha a.25.1.1 16677 1gtmA 419 6.01e+00 1hwyA c.2.1.7 30223 c.58.1.1 33871 1io7A 368 6.19e+00 1f4tA a.104.1.1 18971 1jpxA 84 7.32e+00 h.3.2.1 71783 1h96A 182 7.43e+00 2fha a.25.1.1 60811 1lb3A 182 7.43e+00 a.25.1.1 77873 1l8dA 112 9.99e+00 h.4.12.1 73687 1ir6A 424 1.10e+01 c.107.1.2 71342 2ligA 164 1.24e+01 1vls a.24.2.1 16530 1hvd 319 1.26e+01 1avc a.65.1.1 18154 1so2A 420 1.30e+01 1or4A 178 1.34e+01 1anxA 319 1.36e+01 1avc a.65.1.1 18161 1vls 146 1.39e+01 1vls a.24.2.1 16532 1db1A 259 1.53e+01 1db1A a.123.1.1 19329 1a87 321 1.62e+01 1a87 f.1.1.1 43380 1eb6A 177 1.72e+01 d.92.1.12 64895 1jr8A 117 1.72e+01 a.24.15.1 67115 1d3uB 201 1.72e+01 1aisB a.74.1.2 18386 a.74.1.2 18387 1g7oA 215 1.74e+01 1g7oA a.45.1.1 60332 c.47.1.5 60333 1m2tA 254 1.89e+01 d.165.1.1 84761 1rqjA 299 1.89e+01 1fdyA 297 1.89e+01 1nal3 c.1.10.1 29071 1hl2A 297 1.96e+01 c.1.10.1 83581 5ukdA 194 1.97e+01 1zin c.37.1.1 31851 1abwA 283 1.98e+01 1abwA a.1.1.2 15288 a.1.1.2 15289 1usuA 260 2.04e+01 1vin 268 2.35e+01 1vin a.74.1.1 18354 a.74.1.1 18355 1eca 136 2.37e+01 1flp a.1.1.2 15209 1ecd 136 2.37e+01 1flp a.1.1.2 15211 1nhyA 219 2.37e+01 a.45.1.1 80520 c.47.1.5 80521 1nal1 297 2.43e+01 1nal3 1jraA 117 2.44e+01 a.24.15.1 67117 1r2fA 319 2.44e+01 1r2fA a.25.1.2 16800 1qf9A 194 2.50e+01 1zin c.37.1.1 31848 1eco 136 2.56e+01 1flp a.1.1.2 15208 1aisB 200 2.66e+01 1aisB a.74.1.2 18384 a.74.1.2 18385 1f4tA 368 2.77e+01 1f4tA a.104.1.1 18973 1o04A 500 2.80e+01 c.82.1.1 86508 2mhr 118 2.88e+01 2mhr a.24.4.1 16581 2occB 227 3.01e+01 2occB b.6.1.2 23027 f.17.2.1 43519 3nodB 423 3.01e+01 1nseA d.174.1.1 42513 1ffkM 148 3.04e+01 1ffkM a.94.1.1 18740 5cpp 414 3.21e+01 1phd a.104.1.1 18935 1a8a 318 3.23e+01 1avc a.65.1.1 18169 2ran 316 3.29e+01 1avc a.65.1.1 18170 1auwA 468 3.31e+01 1auwA a.127.1.1 19416 1lkvX 232 3.32e+01 a.118.14.1 73980 1fs7A 485 3.32e+01 1qdbA a.138.1.3 19691 1o20A 427 3.33e+01 c.82.1.1 86556 1a8b 318 3.49e+01 1avc a.65.1.1 18171 1i5nA 146 3.52e+01 1i5nA a.24.10.3 61805 1keyA 235 3.54e+01 a.118.16.1 72389 1n7sA 63 3.59e+01 h.1.15.1 80271 1qe3A 489 3.60e+01 2bce c.69.1.1 34630 1jj2O 148 3.68e+01 1ffkM a.94.1.1 63100 1a7vA 125 3.68e+01 1cpq a.24.3.2 16562 1mqvA 125 3.71e+01 a.24.3.2 79415 1f1eA 154 3.74e+01 a.22.1.2 64927 1ie9A 259 3.82e+01 1db1A a.123.1.1 62318 1j1jA 240 3.88e+01