# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1qqeA	292	9.02e-02	1qqeA	a.118.8.1	19210
256bA	106	5.52e-01	256bA	a.24.3.1	16539
1obbA	480	5.53e-01		c.2.1.5	86760
				d.162.1.2	86761
1eb6A	177	8.78e-01		d.92.1.12	64895
1m6nA	802	9.26e-01		a.162.1.1	78697
				a.172.1.1	78698
				c.37.1.19	78699
				c.37.1.19	78700
1usuA	260	9.51e-01			
1tag	324	1.03e+00	1cipA	a.66.1.1	18197
				c.37.1.8	32080
1tadA	324	1.12e+00	1cipA	a.66.1.1	18194
				c.37.1.8	32077
1n5nA	180	1.13e+00		d.167.1.1	85336
7aatA	401	1.77e+00	1ajsA	c.67.1.1	34250
1g7oA	215	2.33e+00	1g7oA	a.45.1.1	60332
				c.47.1.5	60333
1rh2F	165	3.35e+00	1rh2F	a.26.1.3	16898
1e55A	512	3.35e+00	1e70M	c.1.8.4	28934
1h49A	512	3.41e+00		c.1.8.4	83477
1hw1A	239	3.59e+00	1e2xA	a.4.5.6	16111
				a.78.1.1	18441
1hvd	319	4.09e+00	1avc	a.65.1.1	18154
1bs4A	168	4.11e+00	1bs4A	d.167.1.1	42287
1icjA	168	4.12e+00	1bs4A	d.167.1.1	42284
1qmqA	414	4.66e+00	1phd	a.104.1.1	18907
1e2xA	243	5.12e+00	1e2xA	a.4.5.6	16113
				a.78.1.1	18443
1bsjA	168	5.25e+00	1bs4A	d.167.1.1	42302
1dugA	234	5.37e+00	1b8xA	a.45.1.1	17718
				c.47.1.5	33012
1gakA	141	5.73e+00	1gakA	a.19.1.1	16415
1dzfA	215	5.93e+00	1dzfA	c.52.3.1	33344
				d.78.1.1	39753
1g2aA	168	6.60e+00		d.167.1.1	65109
1dthA	203	6.99e+00	1atlA	d.92.1.9	40324
2xat	212	8.20e+00	2xat	b.81.1.3	28058
1io7A	368	8.29e+00	1f4tA	a.104.1.1	18971
1xat	212	8.30e+00	2xat	b.81.1.3	28059
1i5nA	146	8.77e+00	1i5nA	a.24.10.3	61805
1f4tA	368	8.79e+00	1f4tA	a.104.1.1	18973
1phg	414	1.13e+01	1phd	a.104.1.1	18910
1aep	161	1.16e+01	1aep	a.63.1.1	18139
1dz4A	414	1.17e+01	1phd	a.104.1.1	18903
1atlA	202	1.18e+01	1atlA	d.92.1.9	40322
5cpp	414	1.22e+01	1phd	a.104.1.1	18935
1kugA	203	1.24e+01		d.92.1.9	73008
1kufA	203	1.25e+01		d.92.1.9	73007
1phb	414	1.28e+01	1phd	a.104.1.1	18906
1budA	197	1.29e+01	1atlA	d.92.1.9	40328
1b8xA	280	1.31e+01	1b8xA	a.45.1.1	17739
				c.47.1.5	33033
1j9yA	385	1.44e+01	1j9yA	c.1.8.3	62791
1orjA	130	1.52e+01			
2bmhA	455	1.59e+01	1bu7A	a.104.1.1	18941
1bu7A	455	1.68e+01	1bu7A	a.104.1.1	18937
1mwmA	320	1.69e+01		c.55.1.1	79580
				c.55.1.1	79581
1pbv	195	1.74e+01	1pbv	a.118.3.1	19179
1anxA	319	1.81e+01	1avc	a.65.1.1	18161
1oe1A	336	1.84e+01		b.6.1.3	86891
				b.6.1.3	86892
1phd	414	1.87e+01	1phd	a.104.1.1	18913
1rl4A	188	1.96e+01			
1def	147	2.03e+01	1bs4A	d.167.1.1	42306
1p2fA	220	2.04e+01		a.4.6.1	87720
				c.23.1.1	87721
1jpzA	473	2.20e+01		a.104.1.1	67069
1n81A	186	2.24e+01		a.185.1.1	85388
1k0fA	277	2.26e+01		c.92.2.2	71974
1toaA	313	2.27e+01	1toaA	c.92.2.2	35598
1aj8A	371	2.28e+01	1aj8A	a.103.1.1	18900
1o20A	427	2.47e+01		c.82.1.1	86556
1r8sE	203	2.48e+01			
1ej0A	180	2.62e+01	1ej0A	c.66.1.2	34179
1hkxA	147	2.71e+01		d.17.4.7	83567
2ran	316	2.71e+01	1avc	a.65.1.1	18170
1i1iP	681	2.75e+01	1i1iP	d.92.1.5	40297
1fjgP	88	2.75e+01	1emwA	d.27.1.1	38444
1v02A	565	2.86e+01			
1o9rA	162	3.06e+01		a.25.1.1	86706
1nal3	297	3.11e+01	1nal3		
1a8b	318	3.12e+01	1avc	a.65.1.1	18171
2gsq	202	3.29e+01	1pd21	a.45.1.1	17715
				c.47.1.5	33009
1elkA	157	3.30e+01	1dvpA	a.118.9.2	19217
1a8a	318	3.43e+01	1avc	a.65.1.1	18169
1hl2A	297	3.44e+01		c.1.10.1	83581
1emwA	88	3.59e+01	1emwA	d.27.1.1	38448
1l8nA	679	3.70e+01		c.1.8.10	84564
				d.92.2.2	84565
1r6fA	310	3.73e+01			
1evlA	401	3.91e+01	1qf6A	c.51.1.1	33202
				d.104.1.1	40751
1h77A	605	3.95e+01