# TARGET T0198 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0198.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 231 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.011 0.005 0.011 0.079 0.118 0.776 2 N 0.021 0.012 0.030 0.232 0.139 0.565 3 R 0.013 0.009 0.076 0.389 0.190 0.322 4 L 0.013 0.012 0.105 0.496 0.184 0.190 5 L 0.012 0.005 0.045 0.672 0.111 0.154 6 N 0.007 0.002 0.032 0.794 0.076 0.090 7 E 0.001 0.001 0.014 0.956 0.017 0.011 8 K 0.002 0.001 0.008 0.963 0.012 0.014 9 V 0.001 0.001 0.002 0.989 0.003 0.005 10 E 0.001 0.001 0.002 0.993 0.002 0.002 11 E 0.001 0.001 0.004 0.988 0.004 0.003 12 F 0.001 0.001 0.004 0.989 0.003 0.003 13 K 0.001 0.001 0.002 0.993 0.002 0.002 14 K 0.001 0.001 0.001 0.996 0.001 0.001 15 G 0.001 0.001 0.002 0.993 0.002 0.003 16 V 0.001 0.001 0.004 0.989 0.003 0.003 17 L 0.001 0.001 0.004 0.993 0.002 0.001 18 K 0.001 0.001 0.004 0.994 0.001 0.001 19 A 0.001 0.001 0.002 0.992 0.002 0.004 20 G 0.001 0.001 0.003 0.988 0.002 0.006 21 W 0.001 0.001 0.003 0.993 0.002 0.001 22 F 0.001 0.001 0.004 0.994 0.002 0.001 23 I 0.001 0.001 0.001 0.997 0.001 0.001 24 E 0.001 0.001 0.001 0.998 0.001 0.001 25 K 0.001 0.001 0.001 0.998 0.001 0.001 26 M 0.001 0.001 0.002 0.995 0.001 0.002 27 F 0.001 0.001 0.002 0.994 0.001 0.002 28 R 0.001 0.001 0.002 0.993 0.002 0.002 29 N 0.001 0.001 0.002 0.996 0.002 0.001 30 S 0.001 0.001 0.001 0.997 0.001 0.001 31 I 0.001 0.001 0.002 0.997 0.001 0.001 32 S 0.001 0.001 0.002 0.997 0.001 0.001 33 S 0.001 0.001 0.002 0.996 0.001 0.001 34 L 0.001 0.001 0.007 0.985 0.003 0.004 35 V 0.001 0.001 0.020 0.957 0.015 0.008 36 E 0.002 0.001 0.021 0.913 0.039 0.024 37 R 0.002 0.002 0.009 0.690 0.068 0.229 38 N 0.001 0.001 0.001 0.058 0.050 0.889 39 E 0.001 0.001 0.012 0.965 0.012 0.011 40 S 0.001 0.001 0.012 0.980 0.006 0.002 41 L 0.001 0.001 0.009 0.986 0.004 0.001 42 A 0.001 0.001 0.004 0.989 0.003 0.003 43 R 0.001 0.001 0.005 0.988 0.004 0.003 44 E 0.001 0.001 0.006 0.981 0.007 0.005 45 V 0.001 0.001 0.006 0.974 0.009 0.009 46 I 0.003 0.001 0.012 0.939 0.027 0.018 47 A 0.002 0.001 0.012 0.898 0.042 0.045 48 D 0.002 0.001 0.011 0.750 0.056 0.179 49 E 0.001 0.001 0.010 0.952 0.018 0.019 50 E 0.001 0.001 0.012 0.968 0.012 0.007 51 V 0.001 0.001 0.012 0.972 0.007 0.007 52 V 0.001 0.001 0.006 0.983 0.004 0.005 53 D 0.001 0.001 0.004 0.981 0.005 0.009 54 Q 0.001 0.001 0.002 0.996 0.001 0.001 55 M 0.001 0.001 0.001 0.997 0.001 0.001 56 E 0.001 0.001 0.001 0.998 0.001 0.001 57 V 0.001 0.001 0.001 0.998 0.001 0.001 58 E 0.001 0.001 0.001 0.998 0.001 0.001 59 I 0.001 0.001 0.001 0.997 0.001 0.001 60 Q 0.001 0.001 0.002 0.996 0.001 0.001 61 E 0.001 0.001 0.001 0.999 0.001 0.001 62 K 0.001 0.001 0.001 0.999 0.001 0.001 63 A 0.001 0.001 0.001 0.999 0.001 0.001 64 M 0.001 0.001 0.001 0.998 0.001 0.001 65 E 0.001 0.001 0.001 0.998 0.001 0.001 66 V 0.001 0.001 0.002 0.996 0.002 0.001 67 L 0.001 0.001 0.003 0.993 0.003 0.001 68 G 0.001 0.001 0.009 0.978 0.008 0.004 69 L 0.001 0.001 0.008 0.957 0.019 0.014 70 F 0.003 0.003 0.006 0.848 0.035 0.106 71 S 0.002 0.004 0.003 0.082 0.111 0.798 72 P 0.003 0.009 0.048 0.181 0.217 0.542 73 I 0.011 0.014 0.061 0.308 0.279 0.326 74 G 0.006 0.008 0.040 0.543 0.173 0.230 75 K 0.001 0.002 0.038 0.834 0.052 0.073 76 P 0.001 0.001 0.023 0.952 0.010 0.014 77 L 0.001 0.001 0.004 0.994 0.001 0.001 78 L 0.001 0.001 0.002 0.998 0.001 0.001 79 T 0.001 0.001 0.001 0.999 0.001 0.001 80 V 0.001 0.001 0.001 0.999 0.001 0.001 81 T 0.001 0.001 0.001 0.999 0.001 0.001 82 A 0.001 0.001 0.001 0.999 0.001 0.001 83 G 0.001 0.001 0.001 0.999 0.001 0.001 84 I 0.001 0.001 0.001 0.999 0.001 0.001 85 R 0.001 0.001 0.001 0.998 0.001 0.001 86 V 0.001 0.001 0.002 0.994 0.001 0.002 87 A 0.001 0.001 0.007 0.986 0.002 0.005 88 E 0.001 0.001 0.015 0.973 0.007 0.004 89 L 0.001 0.001 0.013 0.968 0.009 0.009 90 I 0.001 0.001 0.009 0.980 0.005 0.005 91 E 0.001 0.001 0.015 0.974 0.006 0.004 92 N 0.001 0.001 0.015 0.965 0.011 0.008 93 I 0.001 0.001 0.012 0.974 0.005 0.008 94 A 0.001 0.001 0.017 0.934 0.017 0.031 95 D 0.001 0.001 0.035 0.926 0.023 0.015 96 K 0.001 0.001 0.018 0.952 0.015 0.014 97 C 0.001 0.001 0.005 0.985 0.005 0.005 98 H 0.001 0.001 0.004 0.984 0.006 0.005 99 D 0.001 0.001 0.003 0.990 0.003 0.004 100 I 0.001 0.001 0.001 0.995 0.001 0.002 101 A 0.001 0.001 0.001 0.996 0.001 0.001 102 K 0.001 0.001 0.001 0.997 0.001 0.001 103 N 0.001 0.001 0.002 0.994 0.002 0.002 104 V 0.001 0.001 0.003 0.991 0.003 0.003 105 L 0.001 0.001 0.008 0.983 0.004 0.003 106 E 0.001 0.001 0.008 0.981 0.005 0.005 107 L 0.001 0.001 0.011 0.928 0.020 0.039 108 M 0.001 0.003 0.013 0.749 0.071 0.162 109 E 0.002 0.003 0.019 0.328 0.181 0.467 110 E 0.004 0.006 0.010 0.038 0.243 0.700 111 P 0.004 0.006 0.015 0.013 0.260 0.702 112 P 0.007 0.010 0.032 0.009 0.226 0.717 113 L 0.010 0.019 0.020 0.008 0.182 0.762 114 K 0.012 0.016 0.021 0.016 0.231 0.703 115 P 0.008 0.007 0.059 0.036 0.263 0.628 116 L 0.007 0.009 0.333 0.169 0.282 0.200 117 E 0.012 0.010 0.263 0.175 0.332 0.209 118 D 0.010 0.009 0.170 0.325 0.220 0.265 119 I 0.007 0.006 0.039 0.665 0.087 0.196 120 P 0.001 0.001 0.018 0.951 0.016 0.013 121 A 0.001 0.001 0.019 0.962 0.011 0.006 122 M 0.001 0.001 0.008 0.984 0.004 0.003 123 A 0.001 0.001 0.004 0.992 0.002 0.002 124 N 0.001 0.001 0.003 0.992 0.002 0.002 125 Q 0.001 0.001 0.003 0.990 0.003 0.003 126 T 0.001 0.001 0.001 0.995 0.001 0.002 127 S 0.001 0.001 0.001 0.998 0.001 0.001 128 E 0.001 0.001 0.001 0.999 0.001 0.001 129 M 0.001 0.001 0.001 0.998 0.001 0.001 130 L 0.001 0.001 0.001 0.999 0.001 0.001 131 K 0.001 0.001 0.001 0.998 0.001 0.001 132 F 0.001 0.001 0.001 0.998 0.001 0.001 133 A 0.001 0.001 0.001 0.997 0.001 0.001 134 L 0.001 0.001 0.003 0.996 0.001 0.001 135 R 0.001 0.001 0.005 0.993 0.001 0.001 136 M 0.001 0.001 0.003 0.994 0.001 0.001 137 F 0.001 0.001 0.007 0.975 0.008 0.009 138 A 0.003 0.001 0.017 0.914 0.040 0.024 139 D 0.005 0.002 0.016 0.716 0.155 0.105 140 V 0.006 0.008 0.006 0.334 0.198 0.448 141 N 0.002 0.003 0.001 0.025 0.058 0.911 142 V 0.001 0.001 0.030 0.932 0.023 0.014 143 E 0.001 0.001 0.036 0.935 0.021 0.006 144 K 0.002 0.001 0.047 0.934 0.013 0.003 145 S 0.003 0.001 0.015 0.967 0.008 0.006 146 F 0.003 0.001 0.010 0.974 0.007 0.007 147 E 0.003 0.001 0.007 0.974 0.006 0.008 148 V 0.005 0.001 0.008 0.963 0.010 0.013 149 C 0.006 0.002 0.021 0.922 0.026 0.023 150 R 0.006 0.002 0.030 0.891 0.045 0.024 151 M 0.005 0.002 0.023 0.882 0.041 0.048 152 D 0.002 0.001 0.022 0.784 0.080 0.111 153 S 0.001 0.001 0.027 0.859 0.052 0.060 154 K 0.001 0.001 0.016 0.933 0.017 0.032 155 V 0.001 0.001 0.005 0.984 0.005 0.005 156 D 0.001 0.001 0.003 0.976 0.008 0.012 157 D 0.001 0.001 0.002 0.993 0.002 0.003 158 L 0.001 0.001 0.001 0.996 0.001 0.001 159 Y 0.001 0.001 0.001 0.998 0.001 0.001 160 E 0.001 0.001 0.001 0.999 0.001 0.001 161 K 0.001 0.001 0.001 0.998 0.001 0.001 162 V 0.001 0.001 0.001 0.997 0.001 0.002 163 R 0.001 0.001 0.001 0.997 0.001 0.001 164 E 0.001 0.001 0.001 0.999 0.001 0.001 165 E 0.001 0.001 0.001 0.999 0.001 0.001 166 L 0.001 0.001 0.001 0.998 0.001 0.001 167 L 0.001 0.001 0.001 0.996 0.001 0.001 168 L 0.001 0.001 0.002 0.996 0.001 0.001 169 Y 0.001 0.001 0.003 0.991 0.002 0.003 170 M 0.001 0.001 0.006 0.974 0.009 0.011 171 M 0.002 0.002 0.008 0.862 0.072 0.054 172 E 0.003 0.004 0.006 0.615 0.155 0.217 173 S 0.002 0.003 0.001 0.033 0.280 0.681 174 P 0.001 0.001 0.049 0.463 0.347 0.139 175 K 0.006 0.003 0.050 0.632 0.237 0.072 176 Y 0.007 0.002 0.031 0.853 0.073 0.032 177 V 0.002 0.001 0.003 0.990 0.003 0.003 178 K 0.001 0.001 0.002 0.994 0.001 0.002 179 R 0.001 0.001 0.002 0.997 0.001 0.001 180 A 0.001 0.001 0.001 0.998 0.001 0.001 181 L 0.001 0.001 0.001 0.998 0.001 0.001 182 L 0.001 0.001 0.001 0.997 0.001 0.001 183 L 0.001 0.001 0.002 0.996 0.001 0.001 184 L 0.001 0.001 0.004 0.994 0.002 0.001 185 E 0.001 0.001 0.006 0.991 0.002 0.001 186 I 0.001 0.001 0.004 0.994 0.001 0.001 187 A 0.001 0.001 0.004 0.992 0.002 0.003 188 G 0.001 0.001 0.005 0.984 0.005 0.006 189 N 0.001 0.001 0.007 0.971 0.009 0.013 190 I 0.001 0.001 0.004 0.990 0.003 0.003 191 E 0.001 0.001 0.005 0.987 0.003 0.003 192 I 0.002 0.001 0.010 0.977 0.007 0.004 193 I 0.002 0.001 0.007 0.973 0.007 0.011 194 A 0.004 0.001 0.008 0.885 0.026 0.077 195 D 0.001 0.001 0.016 0.949 0.019 0.015 196 Y 0.002 0.001 0.013 0.967 0.010 0.007 197 A 0.003 0.001 0.009 0.977 0.005 0.006 198 T 0.002 0.001 0.007 0.982 0.004 0.005 199 N 0.002 0.001 0.005 0.980 0.004 0.008 200 I 0.001 0.001 0.005 0.986 0.002 0.006 201 V 0.001 0.001 0.006 0.988 0.002 0.002 202 E 0.001 0.001 0.005 0.990 0.003 0.001 203 V 0.002 0.001 0.002 0.993 0.002 0.001 204 S 0.003 0.001 0.001 0.990 0.003 0.002 205 V 0.011 0.001 0.002 0.976 0.007 0.003 206 Y 0.039 0.001 0.002 0.948 0.008 0.002 207 M 0.095 0.002 0.002 0.872 0.025 0.004 208 V 0.111 0.005 0.003 0.721 0.116 0.045 209 Q 0.042 0.005 0.005 0.361 0.308 0.278 210 G 0.066 0.014 0.018 0.087 0.510 0.305 211 E 0.309 0.040 0.025 0.058 0.227 0.341 212 A 0.447 0.032 0.044 0.059 0.160 0.257 213 Y 0.283 0.019 0.057 0.101 0.194 0.346 214 K 0.162 0.016 0.039 0.085 0.240 0.458 215 C 0.074 0.013 0.029 0.149 0.253 0.482 216 Y 0.041 0.010 0.010 0.135 0.199 0.605 217 H 0.038 0.006 0.008 0.190 0.173 0.585 218 D 0.049 0.007 0.014 0.595 0.111 0.224 219 E 0.067 0.009 0.026 0.733 0.083 0.082 220 L 0.109 0.007 0.030 0.716 0.075 0.064 221 L 0.141 0.004 0.033 0.672 0.083 0.067 222 L 0.138 0.004 0.035 0.647 0.089 0.087 223 F 0.143 0.007 0.025 0.558 0.106 0.162 224 K 0.151 0.009 0.024 0.462 0.121 0.233 225 K 0.143 0.013 0.024 0.437 0.129 0.253 226 S 0.115 0.012 0.018 0.288 0.214 0.353 227 G 0.091 0.008 0.018 0.170 0.275 0.438 228 G 0.159 0.010 0.023 0.109 0.265 0.434 229 V 0.294 0.019 0.056 0.179 0.192 0.259 230 L 0.306 0.021 0.052 0.228 0.145 0.248 231 F 0.278 0.014 0.077 0.157 0.175 0.298 232 E 0.215 0.014 0.060 0.110 0.183 0.417 233 S 0.131 0.018 0.041 0.091 0.173 0.546 234 S 0.055 0.016 0.009 0.031 0.117 0.772 235 D 0.019 0.004 0.002 0.009 0.060 0.905