# TARGET T0198 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghstl-dssp-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 7 (1 EBGHSTL ) # The input amino acid frequencies were determined from # alignment T0198.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 231 # Pos AA E B G H S T C 10N 1S 5N 5N 5N 5N 5N 5N 5N 1 M 0.002 0.001 0.001 0.029 0.004 0.003 0.960 2 N 0.018 0.015 0.007 0.211 0.008 0.019 0.723 3 R 0.018 0.009 0.022 0.581 0.094 0.048 0.227 4 L 0.012 0.005 0.035 0.559 0.051 0.078 0.260 5 L 0.005 0.004 0.021 0.722 0.027 0.041 0.180 6 N 0.001 0.001 0.017 0.912 0.010 0.011 0.048 7 E 0.001 0.001 0.017 0.969 0.002 0.008 0.003 8 K 0.001 0.001 0.009 0.977 0.001 0.009 0.004 9 V 0.001 0.001 0.004 0.990 0.001 0.004 0.001 10 E 0.001 0.001 0.001 0.995 0.001 0.003 0.001 11 E 0.001 0.001 0.002 0.990 0.001 0.008 0.001 12 F 0.001 0.001 0.001 0.991 0.001 0.006 0.001 13 K 0.001 0.001 0.001 0.995 0.001 0.004 0.001 14 K 0.001 0.001 0.001 0.989 0.001 0.010 0.001 15 G 0.001 0.001 0.001 0.975 0.001 0.023 0.001 16 V 0.001 0.001 0.002 0.977 0.001 0.017 0.003 17 L 0.001 0.001 0.002 0.982 0.002 0.013 0.001 18 K 0.001 0.001 0.004 0.975 0.001 0.017 0.002 19 A 0.001 0.001 0.002 0.986 0.001 0.009 0.002 20 G 0.001 0.001 0.001 0.996 0.001 0.002 0.001 21 W 0.001 0.001 0.001 0.999 0.001 0.001 0.001 22 F 0.001 0.001 0.001 0.998 0.001 0.001 0.001 23 I 0.001 0.001 0.001 0.998 0.001 0.001 0.001 24 E 0.001 0.001 0.001 0.999 0.001 0.001 0.001 25 K 0.001 0.001 0.001 0.996 0.001 0.004 0.001 26 M 0.001 0.001 0.001 0.993 0.001 0.007 0.001 27 F 0.001 0.001 0.001 0.994 0.001 0.004 0.001 28 R 0.001 0.001 0.002 0.992 0.001 0.006 0.001 29 N 0.001 0.001 0.002 0.975 0.001 0.023 0.001 30 S 0.001 0.001 0.002 0.983 0.001 0.014 0.001 31 I 0.001 0.001 0.001 0.996 0.001 0.002 0.001 32 S 0.001 0.001 0.001 0.998 0.001 0.001 0.001 33 S 0.001 0.001 0.001 0.996 0.001 0.002 0.001 34 L 0.001 0.001 0.003 0.988 0.001 0.008 0.001 35 V 0.001 0.001 0.011 0.952 0.002 0.034 0.001 36 E 0.001 0.001 0.010 0.798 0.002 0.189 0.001 37 R 0.001 0.002 0.005 0.527 0.045 0.390 0.030 38 N 0.001 0.002 0.004 0.209 0.093 0.031 0.661 39 E 0.001 0.001 0.020 0.965 0.001 0.013 0.002 40 S 0.001 0.001 0.026 0.964 0.001 0.010 0.001 41 L 0.001 0.001 0.013 0.981 0.001 0.004 0.001 42 A 0.001 0.001 0.001 0.997 0.001 0.002 0.001 43 R 0.001 0.001 0.001 0.996 0.001 0.003 0.001 44 E 0.001 0.001 0.001 0.987 0.001 0.011 0.001 45 V 0.001 0.001 0.002 0.973 0.001 0.021 0.002 46 I 0.001 0.002 0.008 0.915 0.006 0.061 0.008 47 A 0.001 0.001 0.014 0.756 0.008 0.214 0.007 48 D 0.001 0.001 0.010 0.770 0.033 0.139 0.046 49 E 0.001 0.001 0.019 0.813 0.027 0.033 0.104 50 E 0.002 0.002 0.043 0.804 0.021 0.073 0.056 51 V 0.004 0.002 0.045 0.842 0.025 0.041 0.040 52 V 0.004 0.002 0.016 0.904 0.018 0.023 0.033 53 D 0.002 0.001 0.005 0.930 0.009 0.026 0.027 54 Q 0.001 0.001 0.005 0.962 0.004 0.019 0.009 55 M 0.001 0.001 0.003 0.979 0.002 0.009 0.006 56 E 0.001 0.001 0.002 0.991 0.001 0.003 0.003 57 V 0.001 0.001 0.001 0.994 0.001 0.003 0.001 58 E 0.001 0.001 0.001 0.996 0.001 0.003 0.001 59 I 0.001 0.001 0.001 0.996 0.001 0.002 0.001 60 Q 0.001 0.001 0.001 0.997 0.001 0.002 0.001 61 E 0.001 0.001 0.001 0.998 0.001 0.002 0.001 62 K 0.001 0.001 0.001 0.998 0.001 0.002 0.001 63 A 0.001 0.001 0.001 0.998 0.001 0.002 0.001 64 M 0.001 0.001 0.001 0.999 0.001 0.001 0.001 65 E 0.001 0.001 0.001 0.999 0.001 0.001 0.001 66 V 0.001 0.001 0.001 0.996 0.001 0.003 0.001 67 L 0.001 0.001 0.002 0.984 0.001 0.013 0.001 68 G 0.001 0.001 0.016 0.919 0.001 0.063 0.001 69 L 0.001 0.001 0.024 0.632 0.008 0.331 0.004 70 F 0.002 0.007 0.030 0.373 0.131 0.383 0.075 71 S 0.003 0.004 0.003 0.012 0.537 0.014 0.427 72 P 0.007 0.017 0.054 0.059 0.144 0.268 0.450 73 I 0.016 0.036 0.060 0.082 0.166 0.233 0.407 74 G 0.012 0.014 0.120 0.359 0.095 0.111 0.290 75 K 0.002 0.002 0.053 0.858 0.016 0.040 0.028 76 P 0.001 0.001 0.022 0.946 0.003 0.017 0.011 77 L 0.001 0.001 0.005 0.991 0.001 0.002 0.001 78 L 0.001 0.001 0.001 0.998 0.001 0.001 0.001 79 T 0.001 0.001 0.001 0.998 0.001 0.001 0.001 80 V 0.001 0.001 0.001 0.999 0.001 0.001 0.001 81 T 0.001 0.001 0.001 0.999 0.001 0.001 0.001 82 A 0.001 0.001 0.001 0.999 0.001 0.001 0.001 83 G 0.001 0.001 0.001 0.999 0.001 0.001 0.001 84 I 0.001 0.001 0.001 0.998 0.001 0.001 0.001 85 R 0.001 0.001 0.001 0.991 0.001 0.009 0.001 86 V 0.001 0.001 0.001 0.973 0.001 0.025 0.001 87 A 0.001 0.001 0.003 0.984 0.001 0.011 0.001 88 E 0.001 0.001 0.007 0.964 0.002 0.023 0.003 89 L 0.001 0.001 0.008 0.960 0.002 0.027 0.003 90 I 0.001 0.001 0.003 0.986 0.001 0.008 0.002 91 E 0.001 0.001 0.003 0.988 0.001 0.006 0.001 92 N 0.001 0.001 0.004 0.983 0.001 0.010 0.001 93 I 0.001 0.001 0.002 0.983 0.001 0.014 0.001 94 A 0.001 0.001 0.001 0.988 0.001 0.009 0.001 95 D 0.001 0.001 0.001 0.991 0.001 0.007 0.001 96 K 0.001 0.001 0.002 0.987 0.001 0.009 0.002 97 C 0.001 0.001 0.001 0.994 0.001 0.004 0.001 98 H 0.001 0.001 0.001 0.997 0.001 0.002 0.001 99 D 0.001 0.001 0.001 0.995 0.001 0.004 0.001 100 I 0.001 0.001 0.001 0.994 0.001 0.005 0.001 101 A 0.001 0.001 0.001 0.998 0.001 0.001 0.001 102 K 0.001 0.001 0.001 0.998 0.001 0.001 0.001 103 N 0.001 0.001 0.001 0.995 0.001 0.004 0.001 104 V 0.001 0.001 0.001 0.991 0.001 0.007 0.001 105 L 0.001 0.001 0.003 0.989 0.001 0.007 0.001 106 E 0.001 0.001 0.005 0.970 0.001 0.024 0.001 107 L 0.001 0.001 0.009 0.904 0.003 0.077 0.006 108 M 0.002 0.004 0.019 0.573 0.049 0.283 0.071 109 E 0.013 0.011 0.033 0.121 0.207 0.305 0.310 110 E 0.012 0.008 0.016 0.034 0.407 0.061 0.463 111 P 0.009 0.007 0.009 0.006 0.102 0.040 0.826 112 P 0.010 0.015 0.014 0.006 0.082 0.071 0.803 113 L 0.013 0.040 0.016 0.009 0.128 0.044 0.750 114 K 0.018 0.019 0.010 0.010 0.162 0.017 0.764 115 P 0.019 0.013 0.037 0.025 0.056 0.032 0.819 116 L 0.023 0.018 0.399 0.153 0.065 0.079 0.264 117 E 0.012 0.014 0.350 0.292 0.119 0.131 0.082 118 D 0.007 0.016 0.143 0.417 0.099 0.149 0.170 119 I 0.001 0.001 0.018 0.844 0.021 0.011 0.104 120 P 0.001 0.001 0.009 0.981 0.001 0.004 0.004 121 A 0.001 0.001 0.009 0.985 0.001 0.004 0.001 122 M 0.001 0.001 0.006 0.985 0.001 0.006 0.001 123 A 0.001 0.001 0.001 0.991 0.001 0.007 0.001 124 N 0.001 0.001 0.001 0.991 0.001 0.008 0.001 125 Q 0.001 0.001 0.001 0.989 0.001 0.009 0.001 126 T 0.001 0.001 0.001 0.993 0.001 0.005 0.001 127 S 0.001 0.001 0.001 0.998 0.001 0.002 0.001 128 E 0.001 0.001 0.001 0.997 0.001 0.003 0.001 129 M 0.001 0.001 0.001 0.995 0.001 0.004 0.001 130 L 0.001 0.001 0.001 0.998 0.001 0.002 0.001 131 K 0.001 0.001 0.001 0.999 0.001 0.001 0.001 132 F 0.001 0.001 0.001 0.997 0.001 0.003 0.001 133 A 0.001 0.001 0.001 0.996 0.001 0.004 0.001 134 L 0.001 0.001 0.001 0.998 0.001 0.001 0.001 135 R 0.001 0.001 0.001 0.996 0.001 0.003 0.001 136 M 0.001 0.001 0.001 0.993 0.001 0.005 0.001 137 F 0.001 0.001 0.004 0.971 0.002 0.022 0.001 138 A 0.001 0.001 0.017 0.871 0.007 0.099 0.004 139 D 0.001 0.001 0.016 0.726 0.022 0.223 0.012 140 V 0.001 0.004 0.007 0.572 0.135 0.171 0.111 141 N 0.002 0.008 0.006 0.215 0.089 0.042 0.639 142 V 0.001 0.001 0.026 0.946 0.002 0.020 0.006 143 E 0.001 0.001 0.028 0.960 0.001 0.010 0.001 144 K 0.001 0.001 0.020 0.970 0.001 0.007 0.003 145 S 0.001 0.001 0.004 0.987 0.001 0.007 0.002 146 F 0.001 0.001 0.003 0.984 0.001 0.010 0.001 147 E 0.001 0.001 0.004 0.977 0.001 0.015 0.002 148 V 0.003 0.001 0.006 0.965 0.003 0.016 0.007 149 C 0.005 0.003 0.009 0.944 0.008 0.025 0.007 150 R 0.003 0.002 0.018 0.887 0.006 0.072 0.012 151 M 0.003 0.001 0.012 0.871 0.021 0.051 0.042 152 D 0.001 0.001 0.020 0.890 0.017 0.028 0.043 153 S 0.001 0.001 0.043 0.842 0.012 0.093 0.010 154 K 0.001 0.002 0.043 0.844 0.012 0.082 0.016 155 V 0.001 0.001 0.008 0.947 0.007 0.021 0.015 156 D 0.001 0.001 0.003 0.965 0.003 0.017 0.011 157 D 0.001 0.001 0.002 0.984 0.002 0.007 0.004 158 L 0.001 0.001 0.002 0.989 0.001 0.004 0.003 159 Y 0.001 0.001 0.001 0.994 0.001 0.004 0.001 160 E 0.001 0.001 0.001 0.995 0.001 0.004 0.001 161 K 0.001 0.001 0.001 0.995 0.001 0.004 0.001 162 V 0.001 0.001 0.001 0.993 0.001 0.005 0.002 163 R 0.001 0.001 0.001 0.996 0.001 0.003 0.001 164 E 0.001 0.001 0.001 0.998 0.001 0.002 0.001 165 E 0.001 0.001 0.001 0.996 0.001 0.004 0.001 166 L 0.001 0.001 0.001 0.995 0.001 0.004 0.001 167 L 0.001 0.001 0.001 0.997 0.001 0.002 0.001 168 L 0.001 0.001 0.002 0.993 0.001 0.005 0.001 169 Y 0.001 0.001 0.005 0.969 0.001 0.026 0.001 170 M 0.001 0.001 0.020 0.882 0.005 0.088 0.004 171 M 0.002 0.004 0.041 0.611 0.026 0.286 0.030 172 E 0.005 0.004 0.031 0.399 0.145 0.314 0.102 173 S 0.005 0.003 0.004 0.050 0.438 0.026 0.473 174 P 0.002 0.002 0.045 0.608 0.056 0.173 0.113 175 K 0.006 0.003 0.031 0.757 0.058 0.103 0.041 176 Y 0.013 0.005 0.016 0.861 0.021 0.034 0.050 177 V 0.009 0.002 0.002 0.957 0.006 0.004 0.020 178 K 0.005 0.001 0.002 0.976 0.005 0.003 0.008 179 R 0.004 0.001 0.002 0.983 0.003 0.005 0.003 180 A 0.001 0.001 0.001 0.993 0.001 0.003 0.001 181 L 0.001 0.001 0.001 0.995 0.001 0.002 0.001 182 L 0.001 0.001 0.001 0.994 0.001 0.002 0.001 183 L 0.001 0.001 0.001 0.995 0.001 0.003 0.001 184 L 0.001 0.001 0.001 0.996 0.001 0.002 0.001 185 E 0.001 0.001 0.002 0.989 0.001 0.009 0.001 186 I 0.001 0.001 0.004 0.981 0.001 0.014 0.001 187 A 0.001 0.001 0.008 0.966 0.002 0.023 0.001 188 G 0.001 0.001 0.016 0.804 0.007 0.170 0.003 189 N 0.001 0.001 0.017 0.679 0.011 0.283 0.010 190 I 0.001 0.001 0.010 0.898 0.014 0.030 0.047 191 E 0.003 0.002 0.024 0.908 0.011 0.019 0.033 192 I 0.005 0.002 0.025 0.924 0.010 0.021 0.013 193 I 0.002 0.001 0.008 0.967 0.003 0.014 0.005 194 A 0.002 0.001 0.005 0.973 0.004 0.011 0.004 195 D 0.001 0.001 0.006 0.971 0.004 0.012 0.006 196 Y 0.001 0.001 0.008 0.965 0.003 0.018 0.004 197 A 0.001 0.001 0.004 0.985 0.001 0.009 0.001 198 T 0.001 0.001 0.004 0.984 0.002 0.009 0.001 199 N 0.001 0.001 0.003 0.978 0.002 0.013 0.002 200 I 0.001 0.001 0.002 0.987 0.001 0.009 0.001 201 V 0.002 0.001 0.003 0.987 0.001 0.006 0.001 202 E 0.004 0.001 0.004 0.982 0.002 0.007 0.002 203 V 0.024 0.001 0.007 0.935 0.005 0.025 0.005 204 S 0.046 0.001 0.003 0.930 0.002 0.014 0.004 205 V 0.087 0.001 0.002 0.897 0.002 0.007 0.003 206 Y 0.086 0.001 0.001 0.895 0.002 0.013 0.003 207 M 0.079 0.001 0.001 0.866 0.001 0.045 0.007 208 V 0.073 0.005 0.002 0.789 0.005 0.115 0.013 209 Q 0.028 0.001 0.002 0.141 0.020 0.788 0.021 210 G 0.018 0.001 0.002 0.010 0.107 0.819 0.044 211 E 0.297 0.031 0.008 0.029 0.188 0.102 0.345 212 A 0.612 0.053 0.013 0.015 0.061 0.022 0.223 213 Y 0.434 0.014 0.024 0.015 0.052 0.023 0.438 214 K 0.293 0.022 0.050 0.036 0.077 0.089 0.432 215 C 0.176 0.017 0.061 0.067 0.132 0.146 0.401 216 Y 0.118 0.015 0.032 0.103 0.150 0.110 0.472 217 H 0.066 0.010 0.039 0.265 0.232 0.079 0.309 218 D 0.044 0.007 0.068 0.517 0.078 0.104 0.182 219 E 0.045 0.007 0.059 0.733 0.024 0.066 0.066 220 L 0.075 0.012 0.043 0.742 0.017 0.057 0.053 221 L 0.073 0.004 0.036 0.738 0.023 0.067 0.059 222 L 0.077 0.005 0.041 0.710 0.022 0.073 0.072 223 F 0.132 0.014 0.042 0.578 0.042 0.081 0.112 224 K 0.125 0.007 0.048 0.526 0.046 0.133 0.115 225 K 0.091 0.006 0.040 0.479 0.087 0.148 0.149 226 S 0.037 0.006 0.025 0.502 0.061 0.200 0.170 227 G 0.022 0.005 0.021 0.310 0.126 0.320 0.197 228 G 0.038 0.007 0.029 0.254 0.147 0.197 0.329 229 V 0.092 0.020 0.059 0.396 0.102 0.091 0.241 230 L 0.126 0.029 0.067 0.416 0.063 0.082 0.216 231 F 0.111 0.017 0.102 0.335 0.066 0.094 0.275 232 E 0.067 0.009 0.132 0.314 0.080 0.116 0.281 233 S 0.058 0.013 0.125 0.239 0.113 0.172 0.280 234 S 0.035 0.012 0.051 0.134 0.129 0.152 0.488 235 D 0.018 0.005 0.031 0.051 0.072 0.082 0.742