# List of top-scoring protein chains for T0198.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1mfrA 176 1.51e+00 2fha a.25.1.1 16692 1in5A 334 3.58e+00 1hqcA a.4.5.11 62599 c.37.1.20 62600 1q0gA 117 3.72e+00 1in6A 334 5.87e+00 1hqcA a.4.5.11 62601 c.37.1.20 62602 1in4A 334 5.87e+00 1hqcA a.4.5.11 62597 c.37.1.20 62598 1jr8A 117 6.67e+00 a.24.15.1 67115 1j7kA 334 7.51e+00 1hqcA a.4.5.11 62695 c.37.1.20 62696 1dnyA 91 7.56e+00 1dnyA a.28.1.2 16934 1in8A 334 8.39e+00 1hqcA a.4.5.11 62605 c.37.1.20 62606 1in7A 334 8.68e+00 1hqcA a.4.5.11 62603 c.37.1.20 62604 1i9dA 141 8.92e+00 c.47.1.12 66098 1jzwA 139 8.93e+00 c.47.1.12 67883 1j9bA 140 9.00e+00 c.47.1.12 66459 1r71A 178 1.05e+01 1c9bA 207 1.18e+01 1tfb a.74.1.2 18372 a.74.1.2 18373 1aew 174 1.28e+01 2fha a.25.1.1 16676 1e3yA 104 1.35e+01 1fadA a.77.1.2 18426 1gwgA 174 1.40e+01 a.25.1.1 70669 1cjyA 749 1.46e+01 1rlw b.7.1.1 23178 c.19.1.2 34986 1tfb 208 1.54e+01 1tfb a.74.1.2 18382 a.74.1.2 18383 1gakA 141 1.67e+01 1gakA a.19.1.1 16415 1seiA 130 1.72e+01 1seiA d.140.1.1 41463 1m6nA 802 1.73e+01 a.162.1.1 78697 a.172.1.1 78698 c.37.1.19 78699 c.37.1.19 78700 8atcB 153 1.80e+01 8atcB d.58.2.1 39027 g.41.7.1 45279 1g8aA 227 1.84e+01 1l8dA 112 1.86e+01 h.4.12.1 73687 2sicI 107 1.94e+01 3ssi d.84.1.1 40031 3ssi 113 1.97e+01 3ssi d.84.1.1 40032 1pryA 227 1.97e+01 1oqlA 249 2.07e+01 d.165.1.1 87306 1nktA 922 2.25e+01 a.162.1.1 85830 a.172.1.1 85831 c.37.1.19 85832 c.37.1.19 85833 1m2tA 254 2.31e+01 d.165.1.1 84761 1osvA 230 2.36e+01 1ot7A 229 2.43e+01 1cby 259 2.45e+01 1cby d.103.1.1 40705 256bA 106 2.47e+01 256bA a.24.3.1 16539 1pnsP 83 2.47e+01 i.1.1.1 88183 1jsdB 176 2.50e+01 h.3.1.1 63259 1fjgP 88 2.59e+01 1emwA d.27.1.1 38444 1ml5S 91 2.69e+01 i.1.1.1 79274 1m6tA 106 2.74e+01 a.24.3.1 78705 1oqcA 125 2.75e+01 a.24.15.1 87264 1nbeB 153 2.83e+01 8atcB d.58.2.1 39041 g.41.7.1 45293 1cjcA 460 2.85e+01 1cjcA c.3.1.1 30319 c.4.1.1 30604 1a6q 382 2.86e+01 1a6q a.159.1.1 75801 d.219.1.1 75802 1d09B 153 2.87e+01 8atcB d.58.2.1 39015 g.41.7.1 45267 1rj1A 151 2.88e+01 1whe 86 2.91e+01 1edmB g.3.11.1 44242 g.32.1.1 44974 1r29A 127 3.04e+01 1r6fA 310 3.21e+01 1onkA 254 3.27e+01 1a7vA 125 3.38e+01 1cpq a.24.3.2 16562 1g8pA 350 3.55e+01 1g8pA c.37.1.20 60376 1krrA 203 3.57e+01 b.81.1.3 72899 1lm3B 106 3.62e+01 a.24.3.1 74027 1tubB 427 3.66e+01 1tubA c.32.1.1 31752 d.79.2.1 39804 1fi8D 58 3.69e+01 1sluA 1jffB 445 3.88e+01 c.32.1.1 62934 d.79.2.1 62935