# List of top-scoring protein chains for t04-100-30-stride-ebghtl hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1oshA	232	4.63e-01			
2ran	316	4.66e-01	1avc	a.65.1.1	18170
1q0gA	117	7.09e-01			
1a8b	318	8.50e-01	1avc	a.65.1.1	18171
1jr8A	117	1.69e+00		a.24.15.1	67115
1nktA	922	3.90e+00		a.162.1.1	85830
				a.172.1.1	85831
				c.37.1.19	85832
				c.37.1.19	85833
1s0pA	176	4.57e+00			
1j1jA	240	5.68e+00			
1lf6A	684	5.70e+00		a.102.1.5	77918
				b.30.5.5	77919
1rxwA	336	6.56e+00			
1o0wA	252	6.65e+00		a.149.1.1	80751
				d.50.1.1	80752
1dat	174	6.80e+00	2fha	a.25.1.1	16677
1vls	146	9.70e+00	1vls	a.24.2.1	16532
5ukdA	194	1.08e+01	1zin	c.37.1.1	31851
1v4eA	299	1.17e+01			
1dz4A	414	1.22e+01	1phd	a.104.1.1	18903
1dm5A	315	1.26e+01	1avc	a.65.1.1	18186
1qf9A	194	1.28e+01	1zin	c.37.1.1	31848
1nfvA	179	1.31e+01		a.25.1.1	85642
1b43A	340	1.34e+01	1a76	a.60.7.1	18092
				c.120.1.2	33362
1obbA	480	1.48e+01		c.2.1.5	86760
				d.162.1.2	86761
1qmqA	414	1.55e+01	1phd	a.104.1.1	18907
1gakA	141	1.62e+01	1gakA	a.19.1.1	16415
1m2tA	254	1.67e+01		d.165.1.1	84761
1n45A	233	1.74e+01		a.132.1.1	79981
1iomA	377	1.78e+01		a.103.1.1	83698
1jfzA	154	1.80e+01		a.149.1.1	66655
1fs7A	485	1.98e+01	1qdbA	a.138.1.3	19691
1l8dA	112	2.14e+01		h.4.12.1	73687
1nt2B	258	2.27e+01		a.183.1.1	86150
1ir6A	424	2.36e+01		c.107.1.2	71342
1jogA	146	2.44e+01		a.24.16.2	77142
1uox	296	2.45e+01	1uox	d.96.1.4	40673
				d.96.1.4	40674
1r4uA	301	2.45e+01			
1dmtA	696	2.49e+01	1dmtA	d.92.1.4	40296
1qq8A	214	2.63e+01	1qq8A		
1h96A	182	2.64e+01	2fha	a.25.1.1	60811
1hg4A	279	2.67e+01	1lbd	a.123.1.1	19333
1babA	143	2.67e+01	1abwA	a.1.1.2	15235
1oyeA	1049	2.69e+01		d.58.44.1	87587
				d.58.44.1	87588
				d.58.44.1	87589
				d.58.44.1	87590
				d.225.1.1	87591
				d.225.1.1	87592
				f.35.1.1	87593
				f.35.1.1	87594
1itwA	741	2.76e+01		c.77.1.2	76793
1vh6A	145	2.80e+01			
1usuA	260	2.88e+01			
1j7yA	141	3.00e+01		a.1.1.2	66426
1f5nA	592	3.03e+01	1dg3A	a.114.1.1	19077
				c.37.1.8	32152
1mojA	182	3.19e+01			
1kn1A	160	3.38e+01		a.1.1.3	77455
1umnA	165	3.44e+01			
1orsC	132	3.66e+01		f.14.1.1	87353
1qqeA	292	3.82e+01	1qqeA	a.118.8.1	19210
1gvnA	90	3.90e+01		a.8.2.1	76353