# List of top-scoring protein chains for t04-100-30-str2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1oshA 232 9.57e-02 1nktA 922 2.21e-01 a.162.1.1 85830 a.172.1.1 85831 c.37.1.19 85832 c.37.1.19 85833 1a8b 318 4.33e-01 1avc a.65.1.1 18171 2ran 316 4.66e-01 1avc a.65.1.1 18170 1q0gA 117 4.94e-01 1jr8A 117 6.96e-01 a.24.15.1 67115 1lf6A 684 1.80e+00 a.102.1.5 77918 b.30.5.5 77919 1v4eA 299 2.58e+00 1s0pA 176 3.03e+00 1jfzA 154 6.02e+00 a.149.1.1 66655 1dat 174 6.13e+00 2fha a.25.1.1 16677 1jogA 146 6.72e+00 a.24.16.2 77142 1l8dA 112 7.15e+00 h.4.12.1 73687 1m2tA 254 7.17e+00 d.165.1.1 84761 1h96A 182 9.52e+00 2fha a.25.1.1 60811 1lb3A 182 9.52e+00 a.25.1.1 77873 1obbA 480 1.05e+01 c.2.1.5 86760 d.162.1.2 86761 1vls 146 1.09e+01 1vls a.24.2.1 16532 1rxwA 336 1.11e+01 1dz4A 414 1.22e+01 1phd a.104.1.1 18903 1uby 367 1.23e+01 1uby a.128.1.1 19435 1o0wA 252 1.24e+01 a.149.1.1 80751 d.50.1.1 80752 1qmqA 414 1.27e+01 1phd a.104.1.1 18907 1n81A 186 1.29e+01 a.185.1.1 85388 1aj8A 371 1.29e+01 1aj8A a.103.1.1 18900 1b43A 340 1.31e+01 1a76 a.60.7.1 18092 c.120.1.2 33362 1j1jA 240 1.40e+01 256bA 106 1.52e+01 256bA a.24.3.1 16539 1uox 296 1.62e+01 1uox d.96.1.4 40673 d.96.1.4 40674 1r4uA 301 1.63e+01 1cnt1 187 1.64e+01 1cnt3 1ir6A 424 1.69e+01 c.107.1.2 71342 1usuA 260 1.76e+01 1qf9A 194 1.87e+01 1zin c.37.1.1 31848 1iomA 377 1.91e+01 a.103.1.1 83698 1kxpD 458 1.94e+01 a.126.1.1 73160 a.126.1.1 73161 a.126.1.1 73162 1gakA 141 1.96e+01 1gakA a.19.1.1 16415 1oyeA 1049 1.99e+01 d.58.44.1 87587 d.58.44.1 87588 d.58.44.1 87589 d.58.44.1 87590 d.225.1.1 87591 d.225.1.1 87592 f.35.1.1 87593 f.35.1.1 87594 5ukdA 194 2.01e+01 1zin c.37.1.1 31851 1f5nA 592 2.11e+01 1dg3A a.114.1.1 19077 c.37.1.8 32152 1mojA 182 2.27e+01 1abrA 251 2.28e+01 1mrj d.165.1.1 42196 1io7A 368 2.30e+01 1f4tA a.104.1.1 18971 1h6pA 203 2.30e+01 a.146.1.1 60690 1n40A 396 2.31e+01 a.104.1.1 79977 1j1qA 261 2.32e+01 1fcyA 236 2.37e+01 2lbd a.123.1.1 19282 1zymA 258 2.39e+01 1zymA a.60.10.1 18110 c.8.1.2 30705 1r2fA 319 2.43e+01 1r2fA a.25.1.2 16800 1m48A 133 2.48e+01 a.26.1.2 74443 1hg4A 279 2.48e+01 1lbd a.123.1.1 19333 1q5nA 454 2.52e+01 2e2aA 105 2.53e+01 a.7.2.1 88499 1vh6A 145 2.59e+01 1nfvA 179 2.68e+01 a.25.1.1 85642 2hgsA 474 2.69e+01 2hgsA c.30.1.4 31722 d.142.1.6 75997 1qq8A 214 2.73e+01 1qq8A 1oqcA 125 2.92e+01 a.24.15.1 87264 1h72C 296 3.00e+01 d.14.1.5 60712 d.58.26.1 60713 1qciA 262 3.07e+01 1qi7A d.165.1.1 42201 1mhqA 148 3.11e+01 a.118.9.2 84973 1i5nA 146 3.16e+01 1i5nA a.24.10.3 61805 1di1A 300 3.19e+01 1di1A a.128.1.4 19446 1e2aA 105 3.20e+01 1e2aA a.7.2.1 16322 1gcvA 140 3.23e+01 1cg5B a.1.1.2 15410 1pk5A 248 3.24e+01 a.123.1.1 88139 1eyhA 144 3.26e+01 1eduA a.118.9.1 19214 1gvnA 90 3.41e+01 a.8.2.1 76353 1j8uA 325 3.41e+01 d.178.1.1 71611 4pah 308 3.41e+01 4pah d.178.1.1 42576 1fwkA 296 3.54e+01 1fwkA d.14.1.5 37576 d.58.26.1 39398 1g87A 614 3.57e+01 a.102.1.2 83275 b.2.2.2 83276 1gtmA 419 3.72e+01 1hwyA c.2.1.7 30223 c.58.1.1 33871 1dm5A 315 3.84e+01 1avc a.65.1.1 18186 1bf5A 545 3.88e+01 1bg1A a.47.1.1 17766 b.2.5.5 22460 d.93.1.1 40526 1hkxA 147 3.95e+01 d.17.4.7 83567