# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1oshA	232	3.59e-01			
1q0gA	117	8.36e-01			
1a8b	318	1.04e+00	1avc	a.65.1.1	18171
2ran	316	1.39e+00	1avc	a.65.1.1	18170
1jr8A	117	1.57e+00		a.24.15.1	67115
1nktA	922	2.35e+00		a.162.1.1	85830
				a.172.1.1	85831
				c.37.1.19	85832
				c.37.1.19	85833
1lf6A	684	3.69e+00		a.102.1.5	77918
				b.30.5.5	77919
1io7A	368	6.54e+00	1f4tA	a.104.1.1	18971
1v4eA	299	7.59e+00			
1fcyA	236	7.97e+00	2lbd	a.123.1.1	19282
1l8dA	112	8.40e+00		h.4.12.1	73687
1vls	146	9.08e+00	1vls	a.24.2.1	16532
1o0wA	252	9.28e+00		a.149.1.1	80751
				d.50.1.1	80752
256bA	106	1.07e+01	256bA	a.24.3.1	16539
1orsC	132	1.20e+01		f.14.1.1	87353
1gakA	141	1.27e+01	1gakA	a.19.1.1	16415
1m2tA	254	1.35e+01		d.165.1.1	84761
1qf9A	194	1.37e+01	1zin	c.37.1.1	31848
5ukdA	194	1.39e+01	1zin	c.37.1.1	31851
1s0pA	176	1.46e+01			
1oyeA	1049	1.50e+01		d.58.44.1	87587
				d.58.44.1	87588
				d.58.44.1	87589
				d.58.44.1	87590
				d.225.1.1	87591
				d.225.1.1	87592
				f.35.1.1	87593
				f.35.1.1	87594
1ir6A	424	1.54e+01		c.107.1.2	71342
1jogA	146	1.57e+01		a.24.16.2	77142
1gvnA	90	1.62e+01		a.8.2.1	76353
1dat	174	1.62e+01	2fha	a.25.1.1	16677
1mqvA	125	1.66e+01		a.24.3.2	79415
1dm5A	315	1.76e+01	1avc	a.65.1.1	18186
1q5nA	454	1.80e+01			
1ovlA	271	1.86e+01		a.123.1.1	87455
1aj8A	371	1.88e+01	1aj8A	a.103.1.1	18900
1j1jA	240	2.22e+01			
1jfzA	154	2.29e+01		a.149.1.1	66655
1r2fA	319	2.73e+01	1r2fA	a.25.1.2	16800
1qq8A	214	2.88e+01	1qq8A		
1hg4A	279	2.91e+01	1lbd	a.123.1.1	19333
1gtmA	419	3.12e+01	1hwyA	c.2.1.7	30223
				c.58.1.1	33871
1obbA	480	3.31e+01		c.2.1.5	86760
				d.162.1.2	86761
1ka2A	499	3.34e+01		d.92.1.5	77305
1iomA	377	3.46e+01		a.103.1.1	83698
1h6gA	256	3.50e+01	1h6gA	a.24.9.1	60669
				a.24.9.1	60670
1oqcA	125	3.62e+01		a.24.15.1	87264
1uox	296	3.93e+01	1uox	d.96.1.4	40673
				d.96.1.4	40674
1r4uA	301	3.93e+01