# List of top-scoring protein chains for t04-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1oshA 232 7.52e-02 1nktA 922 4.22e-01 a.162.1.1 85830 a.172.1.1 85831 c.37.1.19 85832 c.37.1.19 85833 2ran 316 4.34e-01 1avc a.65.1.1 18170 1a8b 318 4.45e-01 1avc a.65.1.1 18171 1q0gA 117 1.18e+00 1jr8A 117 1.34e+00 a.24.15.1 67115 1lf6A 684 1.40e+00 a.102.1.5 77918 b.30.5.5 77919 1v4eA 299 2.56e+00 1s0pA 176 3.88e+00 1vls 146 4.53e+00 1vls a.24.2.1 16532 1dat 174 4.83e+00 2fha a.25.1.1 16677 1jfzA 154 5.04e+00 a.149.1.1 66655 1io7A 368 5.67e+00 1f4tA a.104.1.1 18971 1j1jA 240 6.05e+00 1f5nA 592 6.24e+00 1dg3A a.114.1.1 19077 c.37.1.8 32152 1jogA 146 6.49e+00 a.24.16.2 77142 1l8dA 112 7.72e+00 h.4.12.1 73687 1b43A 340 7.99e+00 1a76 a.60.7.1 18092 c.120.1.2 33362 1cnt1 187 8.19e+00 1cnt3 1q5nA 454 8.46e+00 1h96A 182 8.83e+00 2fha a.25.1.1 60811 1lb3A 182 8.83e+00 a.25.1.1 77873 1n81A 186 9.03e+00 a.185.1.1 85388 1uby 367 9.05e+00 1uby a.128.1.1 19435 1rxwA 336 9.28e+00 1aj8A 371 9.32e+00 1aj8A a.103.1.1 18900 1m2tA 254 9.55e+00 d.165.1.1 84761 256bA 106 1.14e+01 256bA a.24.3.1 16539 1gakA 141 1.14e+01 1gakA a.19.1.1 16415 1mojA 182 1.17e+01 1eyhA 144 1.28e+01 1eduA a.118.9.1 19214 1obbA 480 1.28e+01 c.2.1.5 86760 d.162.1.2 86761 1zymA 258 1.28e+01 1zymA a.60.10.1 18110 c.8.1.2 30705 1qmqA 414 1.33e+01 1phd a.104.1.1 18907 1dz4A 414 1.49e+01 1phd a.104.1.1 18903 1ir6A 424 1.60e+01 c.107.1.2 71342 1iomA 377 1.64e+01 a.103.1.1 83698 2e2aA 105 1.69e+01 a.7.2.1 88499 1o0wA 252 1.73e+01 a.149.1.1 80751 d.50.1.1 80752 1usuA 260 1.81e+01 1kn1A 160 1.82e+01 a.1.1.3 77455 1h72C 296 1.90e+01 d.14.1.5 60712 d.58.26.1 60713 1hg4A 279 1.93e+01 1lbd a.123.1.1 19333 1r2fA 319 1.94e+01 1r2fA a.25.1.2 16800 1oyeA 1049 1.96e+01 d.58.44.1 87587 d.58.44.1 87588 d.58.44.1 87589 d.58.44.1 87590 d.225.1.1 87591 d.225.1.1 87592 f.35.1.1 87593 f.35.1.1 87594 1kxpD 458 2.00e+01 a.126.1.1 73160 a.126.1.1 73161 a.126.1.1 73162 1fcyA 236 2.01e+01 2lbd a.123.1.1 19282 2hgsA 474 2.02e+01 2hgsA c.30.1.4 31722 d.142.1.6 75997 1vh6A 145 2.04e+01 5ukdA 194 2.08e+01 1zin c.37.1.1 31851 1e2aA 105 2.09e+01 1e2aA a.7.2.1 16322 1qf9A 194 2.09e+01 1zin c.37.1.1 31848 1uox 296 2.14e+01 1uox d.96.1.4 40673 d.96.1.4 40674 1g87A 614 2.15e+01 a.102.1.2 83275 b.2.2.2 83276 1fwkA 296 2.15e+01 1fwkA d.14.1.5 37576 d.58.26.1 39398 1r4uA 301 2.15e+01 1nfvA 179 2.18e+01 a.25.1.1 85642 1m48A 133 2.29e+01 a.26.1.2 74443 1orsC 132 2.33e+01 f.14.1.1 87353 1i5nA 146 2.44e+01 1i5nA a.24.10.3 61805 1gvnA 90 2.61e+01 a.8.2.1 76353 1babA 143 2.64e+01 1abwA a.1.1.2 15235 1j1qA 261 2.92e+01 1umnA 165 3.07e+01 4pah 308 3.22e+01 4pah d.178.1.1 42576 1j8uA 325 3.22e+01 d.178.1.1 71611 1j7yA 141 3.25e+01 a.1.1.2 66426 1n45A 233 3.26e+01 a.132.1.1 79981 1pk5A 248 3.32e+01 a.123.1.1 88139 1is2A 661 3.40e+01 a.29.3.2 71382 a.29.3.2 71383 e.6.1.2 71384 1q16C 225 3.45e+01 1jpzA 473 3.53e+01 a.104.1.1 67069 1irdA 141 3.58e+01 a.1.1.2 66286 1qq8A 214 3.61e+01 1qq8A 1xgsA 295 3.69e+01 1bn5 a.4.5.25 16216 d.127.1.1 41153 1db1A 259 3.71e+01 1db1A a.123.1.1 19329 1ouvA 273 3.71e+01 1hkxA 147 3.82e+01 d.17.4.7 83567 1h6pA 203 3.85e+01 a.146.1.1 60690 1n40A 396 3.98e+01 a.104.1.1 79977 1s7zA 117 4.00e+01 1ka2A 499 4.00e+01 d.92.1.5 77305