# List of top-scoring protein chains for t04-100-30-bys hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1q0gA 117 1.94e-01 1oshA 232 2.89e-01 a.123.1.1 -1697 1nktA 922 4.26e-01 a.162.1.1 85830 a.172.1.1 85831 c.37.1.19 85832 c.37.1.19 85833 1l8dA 112 5.92e-01 h.4.12.1 73687 256bA 106 6.31e-01 256bA a.24.3.1 16539 1jr8A 117 7.58e-01 a.24.15.1 67115 1dat 174 9.70e-01 2fha a.25.1.1 16677 1v4xB 146 1.11e+00 1qmqA 414 1.75e+00 1phd a.104.1.1 18907 1fcyA 236 2.27e+00 2lbd a.123.1.1 19282 1lf6A 684 2.30e+00 a.102.1.5 77918 b.30.5.5 77919 1babA 143 2.44e+00 1abwA a.1.1.2 15235 1io7A 368 2.49e+00 1f4tA a.104.1.1 18971 1v4eA 299 2.54e+00 a.128.1.1 -1781 1obbA 480 2.54e+00 c.2.1.5 86760 d.162.1.2 86761 1rj1A 151 2.65e+00 unknown_sccs -753 1irdA 141 2.69e+00 a.1.1.2 66286 1orsC 132 2.79e+00 f.14.1.1 87353 1dz4A 414 2.92e+00 1phd a.104.1.1 18903 1fwkA 296 3.06e+00 1fwkA d.14.1.5 37576 d.58.26.1 39398 1vjtA 483 3.20e+00 c.2.1.5 -5941 d.162.1.2 -11508 1nfvA 179 3.63e+00 a.25.1.1 85642 1ir6A 424 3.88e+00 c.107.1.2 71342 1h72C 296 4.05e+00 d.14.1.5 60712 d.58.26.1 60713 1usuA 260 4.09e+00 unknown_sccs -9045 1jogA 146 4.27e+00 a.24.16.2 77142 1t5jA 313 4.35e+00 unknown_sccs -1951 1n81A 186 4.56e+00 a.185.1.1 85388 1mojA 182 5.14e+00 a.25.1.1 -669 1j1jA 240 5.21e+00 a.118.16.1 -1637 1s0pA 176 5.64e+00 unknown_sccs -1156 1gakA 141 5.76e+00 1gakA a.19.1.1 16415 1vh6A 145 5.84e+00 unknown_sccs -617 1r2fA 319 5.89e+00 1r2fA a.25.1.2 16800 1gvnA 90 5.95e+00 a.8.2.1 76353 1i3dA 146 6.41e+00 a.1.1.2 61587 1j7yA 141 6.85e+00 a.1.1.2 66426 1di1A 300 8.31e+00 1di1A a.128.1.4 19446 1tuhA 156 8.34e+00 1iwhA 141 9.58e+00 a.1.1.2 76882 1dpsA 167 9.71e+00 1dpsA a.25.1.1 16716 1h96A 182 1.11e+01 2fha a.25.1.1 60811 1umnA 165 1.17e+01 a.25.1.1 -656 1iomA 377 1.20e+01 a.103.1.1 83698 1hl2A 297 1.30e+01 c.1.10.1 83581 1e2aA 105 1.31e+01 1e2aA a.7.2.1 16322 3ertA 261 1.31e+01 3erdA a.123.1.1 19292 1f5nA 592 1.32e+01 1dg3A a.114.1.1 19077 c.37.1.8 32152 1hkxA 147 1.34e+01 d.17.4.7 83567 1lb3A 182 1.35e+01 a.25.1.1 77873 1fkmA 396 1.36e+01 1fkmA a.69.2.1 18315 a.69.2.1 18316 2ran 316 1.37e+01 1avc a.65.1.1 18170 1rxwA 336 1.42e+01 a.60.7.1 -1041 c.120.1.2 -6680 1b43A 340 1.44e+01 1a76 a.60.7.1 18092 c.120.1.2 33362 2e2aA 105 1.45e+01 a.7.2.1 88499 1n7sA 63 1.75e+01 h.1.15.1 80271 1m2tA 254 1.76e+01 d.165.1.1 84761 1bf5A 545 1.80e+01 1bg1A a.47.1.1 17766 b.2.5.5 22460 d.93.1.1 40526 1th8A 145 1.99e+01 1o0wA 252 2.01e+01 a.149.1.1 80751 d.50.1.1 80752 1db1A 259 2.02e+01 1db1A a.123.1.1 19329 1n5uA 585 2.16e+01 a.126.1.1 85339 a.126.1.1 85340 a.126.1.1 85341 1fm9D 272 2.16e+01 2prgA a.123.1.1 19313 1a8b 318 2.16e+01 1avc a.65.1.1 18171 1p36A 164 2.23e+01 d.2.1.3 -8840 1g87A 614 2.30e+01 a.102.1.2 83275 b.2.2.2 83276 1pq1B 33 2.35e+01 1ka2A 499 2.39e+01 d.92.1.5 77305 1h6gA 256 2.40e+01 1h6gA a.24.9.1 60669 a.24.9.1 60670 1p3qQ 54 2.42e+01 a.5.2.4 87748 1kn1A 160 2.43e+01 a.1.1.3 77455 1w0bA 102 2.48e+01 1oaoA 674 2.50e+01 e.26.1.2 86744 1pd21 199 2.52e+01 1pd21 1rqjA 299 2.71e+01 a.128.1.1 -1774 119l 164 2.83e+01 1l92 d.2.1.3 36622 1q5nA 454 2.87e+01 a.127.1.1 -1756 1r4uA 301 2.87e+01 d.96.1.4 -10709 d.96.1.4 -10710 1uox 296 2.89e+01 1uox 1gqeA 365 2.89e+01 e.38.1.1 70351 7aatA 401 2.97e+01 1ajsA c.67.1.1 34250 1elkA 157 3.21e+01 1dvpA a.118.9.2 19217 1vf6C 72 3.23e+01 unknown_sccs -1180 1hg4A 279 3.30e+01 1lbd a.123.1.1 19333 1eb6A 177 3.37e+01 d.92.1.12 64895 1fh0A 221 3.48e+01 1cs8A d.3.1.1 59832 1e7aA 585 3.49e+01 1bj5 a.126.1.1 19360 a.126.1.1 19361 a.126.1.1 19362 1bpoA 494 3.56e+01 1bpoA a.118.1.4 19143 b.69.6.1 27670 1orjA 130 3.56e+01 unknown_sccs -611 1or4A 178 3.72e+01 a.1.1.2 -91 1ie9A 259 3.75e+01 1db1A a.123.1.1 62318 1gcvA 140 3.75e+01 1cg5B a.1.1.2 15410 1khbA 625 3.78e+01 c.91.1.1 68606 c.109.1.1 68607 1s5aA 150 3.79e+01 unknown_sccs -9300 1k32A 1045 3.81e+01 b.36.1.3 68068 b.68.7.1 68069 b.69.9.1 68070 c.14.1.2 68071 1xgsA 295 3.83e+01 1bn5 a.4.5.25 16216 d.127.1.1 41153 1cnt1 187 3.91e+01 1cnt3 5ukdA 194 3.94e+01 1zin c.37.1.1 31851