# List of top-scoring protein chains for t04-100-30-alpha hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1q0gA 117 1.58e-01 1oshA 232 4.25e-01 1io7A 368 5.74e-01 1f4tA a.104.1.1 18971 1jr8A 117 9.63e-01 a.24.15.1 67115 1l8dA 112 1.18e+00 h.4.12.1 73687 1gakA 141 1.35e+00 1gakA a.19.1.1 16415 1j1jA 240 1.45e+00 256bA 106 1.54e+00 256bA a.24.3.1 16539 1n81A 186 1.56e+00 a.185.1.1 85388 1lf6A 684 1.58e+00 a.102.1.5 77918 b.30.5.5 77919 1jogA 146 1.61e+00 a.24.16.2 77142 1nktA 922 1.66e+00 a.162.1.1 85830 a.172.1.1 85831 c.37.1.19 85832 c.37.1.19 85833 1dz4A 414 2.59e+00 1phd a.104.1.1 18903 1obbA 480 3.02e+00 c.2.1.5 86760 d.162.1.2 86761 1f5nA 592 3.09e+00 1dg3A a.114.1.1 19077 c.37.1.8 32152 1v4eA 299 3.41e+00 1qmqA 414 3.96e+00 1phd a.104.1.1 18907 1s0pA 176 4.10e+00 1rj1A 151 4.29e+00 1fcyA 236 4.75e+00 2lbd a.123.1.1 19282 1m2tA 254 5.17e+00 d.165.1.1 84761 1dat 174 5.93e+00 2fha a.25.1.1 16677 1h72C 296 6.37e+00 d.14.1.5 60712 d.58.26.1 60713 1fwkA 296 6.51e+00 1fwkA d.14.1.5 37576 d.58.26.1 39398 1iomA 377 6.58e+00 a.103.1.1 83698 1b43A 340 7.44e+00 1a76 a.60.7.1 18092 c.120.1.2 33362 1mojA 182 7.76e+00 1usuA 260 9.30e+00 1irdA 141 9.32e+00 a.1.1.2 66286 1ir6A 424 9.69e+00 c.107.1.2 71342 1orsC 132 1.19e+01 f.14.1.1 87353 1m48A 133 1.22e+01 a.26.1.2 74443 1kn1A 160 1.24e+01 a.1.1.3 77455 1hg4A 279 1.37e+01 1lbd a.123.1.1 19333 2hgsA 474 1.38e+01 2hgsA c.30.1.4 31722 d.142.1.6 75997 1h6gA 256 1.43e+01 1h6gA a.24.9.1 60669 a.24.9.1 60670 1oktA 211 1.53e+01 1gtmA 419 1.61e+01 1hwyA c.2.1.7 30223 c.58.1.1 33871 1n7sA 63 1.69e+01 h.1.15.1 80271 1rxwA 336 1.75e+01 1babA 143 1.82e+01 1abwA a.1.1.2 15235 1uox 296 1.82e+01 1uox d.96.1.4 40673 d.96.1.4 40674 1n5uA 585 1.83e+01 a.126.1.1 85339 a.126.1.1 85340 a.126.1.1 85341 1r4uA 301 2.16e+01 1nfvA 179 2.26e+01 a.25.1.1 85642 1vls 146 2.43e+01 1vls a.24.2.1 16532 1pq1B 33 2.49e+01 1itwA 741 2.52e+01 c.77.1.2 76793 1gvnA 90 2.53e+01 a.8.2.1 76353 1vj7A 393 2.63e+01 1g87A 614 2.75e+01 a.102.1.2 83275 b.2.2.2 83276 1lb3A 182 2.77e+01 a.25.1.1 77873 1hl2A 297 2.81e+01 c.1.10.1 83581 1xgsA 295 2.82e+01 1bn5 a.4.5.25 16216 d.127.1.1 41153 1j7yA 141 2.84e+01 a.1.1.2 66426 1d8dA 377 2.87e+01 1ft1A a.118.6.1 19185 1cnt1 187 2.87e+01 1cnt3 1bf5A 545 2.88e+01 1bg1A a.47.1.1 17766 b.2.5.5 22460 d.93.1.1 40526 1di1A 300 2.89e+01 1di1A a.128.1.4 19446 1qazA 351 2.96e+01 1qazA a.102.3.1 18848 1fkmA 396 3.03e+01 1fkmA a.69.2.1 18315 a.69.2.1 18316 1o0wA 252 3.10e+01 a.149.1.1 80751 d.50.1.1 80752 1t5jA 313 3.13e+01 1vh6A 145 3.15e+01 1p3qQ 54 3.16e+01 a.5.2.4 87748 1hkxA 147 3.22e+01 d.17.4.7 83567 1ho8A 480 3.23e+01 1ho8A a.118.1.9 61107 1pbe 394 3.24e+01 1pbe c.3.1.2 30338 d.16.1.2 37869 2mhr 118 3.25e+01 2mhr a.24.4.1 16581 1vf6C 72 3.33e+01 2e2aA 105 3.67e+01 a.7.2.1 88499 1q5nA 454 3.67e+01 1qf9A 194 3.69e+01 1zin c.37.1.1 31848 1h5zA 455 3.77e+01 1hw1A 239 3.78e+01 1e2xA a.4.5.6 16111 a.78.1.1 18441 1rqjA 299 3.79e+01 1i5nA 146 3.80e+01 1i5nA a.24.10.3 61805 1jcfA 344 3.82e+01 c.55.1.1 62878 c.55.1.1 62879 1kyqA 274 3.83e+01 c.2.1.11 73281 e.37.1.1 73282 1dpsA 167 3.92e+01 1dpsA a.25.1.1 16716 1ehyA 294 3.93e+01 1ehyA c.69.1.11 34693 1e7aA 585 3.98e+01 1bj5 a.126.1.1 19360 a.126.1.1 19361 a.126.1.1 19362