# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1obbA	480	1.47e+00		c.2.1.5	86760
				d.162.1.2	86761
1qqeA	292	1.74e+00	1qqeA	a.118.8.1	19210
1gakA	141	1.85e+00	1gakA	a.19.1.1	16415
1aj8A	371	2.03e+00	1aj8A	a.103.1.1	18900
1usuA	260	2.04e+00			
256bA	106	2.95e+00	256bA	a.24.3.1	16539
1q5nA	454	4.63e+00			
1in4A	334	5.30e+00	1hqcA	a.4.5.11	62597
				c.37.1.20	62598
1hw1A	239	5.57e+00	1e2xA	a.4.5.6	16111
				a.78.1.1	18441
1evlA	401	5.86e+00	1qf6A	c.51.1.1	33202
				d.104.1.1	40751
1dugA	234	8.52e+00	1b8xA	a.45.1.1	17718
				c.47.1.5	33012
1hl2A	297	9.29e+00		c.1.10.1	83581
1g7oA	215	1.07e+01	1g7oA	a.45.1.1	60332
				c.47.1.5	60333
1in6A	334	1.09e+01	1hqcA	a.4.5.11	62601
				c.37.1.20	62602
1s6yA	450	1.20e+01			
1fvzA	271	1.27e+01	1fvzA	d.129.3.4	60050
1aep	161	1.33e+01	1aep	a.63.1.1	18139
2mhr	118	1.52e+01	2mhr	a.24.4.1	16581
1r6fA	310	1.68e+01			
1oshA	232	1.89e+01			
1q0gA	117	2.11e+01			
1n5nA	180	2.18e+01		d.167.1.1	85336
1bs4A	168	2.32e+01	1bs4A	d.167.1.1	42287
1b8dA	164	2.35e+01	1cpcA	a.1.1.3	15665
1eb6A	177	2.62e+01		d.92.1.12	64895
1uox	296	2.85e+01	1uox	d.96.1.4	40673
				d.96.1.4	40674
1e55A	512	2.94e+01	1e70M	c.1.8.4	28934
1qv9A	283	2.99e+01			
1mqvA	125	2.99e+01		a.24.3.2	79415
1eemA	241	3.11e+01	1eemA	a.45.1.1	17717
				c.47.1.5	33011
1tadA	324	3.18e+01	1cipA	a.66.1.1	18194
				c.37.1.8	32077
1h49A	512	3.28e+01		c.1.8.4	83477
1g2aA	168	3.53e+01		d.167.1.1	65109
1rj1A	151	3.60e+01			
1r4uA	301	3.65e+01