PFRMAT RR
TARGET T0198
AUTHOR 4204-4258-2837
REMARK From group SAM-TO4-hand under the direction of
REMARK Kevin Karplus.
REMARK Project by George Shackelford and Kevin Karplus
REMARK The value given is an approximation of the probability
REMARK as provided by the neural network.
REMARK The number of predictions is limited to .5*sequence_length.
REMARK
METHOD The predictor is an artificial neural network
METHOD using 134 inputs.
METHOD Input includes separation and sequence length, corrected
METHOD mutual information between columns (M. Cline) and 
METHOD an e-value measure of correlation between columns (K Karplus) 
METHOD Other inputs are from alignments and
METHOD secondary predictions from SAM-t2k and SAM-t04 of 
METHOD University of California, Santa Cruz
METHOD This version uses a new error function designed to improve
METHOD the top scores per protein.
MODEL 1
MNRLLNEKVEEFKKGVLKAGWFIEKMFRNSISSLVERNESLAREVIADEE
VVDQMEVEIQEKAMEVLGLFSPIGKPLLTVTAGIRVAELIENIADKCHDI
AKNVLELMEEPPLKPLEDIPAMANQTSEMLKFALRMFADVNVEKSFEVCR
MDSKVDDLYEKVREELLLYMMESPKYVKRALLLLEIAGNIEIIADYATNI
VEVSVYMVQGEAYKCYHDELLLFKKSGGVLFESSD
152 191 0 8 0.605
156 191 0 8 0.531
63 185 0 8 0.531
20 134 0 8 0.525
63 152 0 8 0.517
82 191 0 8 0.495
152 195 0 8 0.489
68 152 0 8 0.472
71 89 0 8 0.46
129 152 0 8 0.457
77 152 0 8 0.457
72 152 0 8 0.457
63 77 0 8 0.457
152 198 0 8 0.454
73 185 0 8 0.454
129 194 0 8 0.448
180 202 0 8 0.442
63 72 0 8 0.442
156 195 0 8 0.439
74 152 0 8 0.439
63 191 0 8 0.439
63 73 0 8 0.439
77 92 0 8 0.436
95 202 0 8 0.433
77 206 0 8 0.433
60 152 0 8 0.433
191 206 0 8 0.43
12 63 0 8 0.427
152 181 0 8 0.424
145 201 0 8 0.424
63 203 0 8 0.421
56 85 0 8 0.421
49 91 0 8 0.421
49 95 0 8 0.418
60 72 0 8 0.409
72 188 0 8 0.407
53 95 0 8 0.407
152 188 0 8 0.404
76 152 0 8 0.404
12 72 0 8 0.404
8 166 0 8 0.404
129 191 0 8 0.398
101 202 0 8 0.398
71 159 0 8 0.398
89 199 0 8 0.395
85 152 0 8 0.395
5 166 0 8 0.395
152 206 0 8 0.392
166 183 0 8 0.389
78 206 0 8 0.389
166 190 0 8 0.386
19 94 0 8 0.381
72 185 0 8 0.378
2 185 0 8 0.378
63 74 0 8 0.375
60 76 0 8 0.372
68 85 0 8 0.37
67 78 0 8 0.37
53 91 0 8 0.37
72 92 0 8 0.367
68 191 0 8 0.367
76 182 0 8 0.361
66 191 0 8 0.361
122 194 0 8 0.356
67 77 0 8 0.356
12 77 0 8 0.356
78 152 0 8 0.353
101 194 0 8 0.35
123 155 0 8 0.347
33 97 0 8 0.347
5 195 0 8 0.347
85 129 0 8 0.345
62 72 0 8 0.345
73 152 0 8 0.342
72 82 0 8 0.337
15 185 0 8 0.337
77 191 0 8 0.334
60 73 0 8 0.334
70 152 0 8 0.331
12 92 0 8 0.331
96 196 0 8 0.329
77 156 0 8 0.329
12 166 0 8 0.329
2 70 0 8 0.329
77 102 0 8 0.326
66 190 0 8 0.326
15 180 0 8 0.326
1 82 0 8 0.326
74 92 0 8 0.323
60 85 0 8 0.323
60 77 0 8 0.323
5 68 0 8 0.323
92 189 0 8 0.321
69 78 0 8 0.321
130 197 0 8 0.318
89 189 0 8 0.318
74 188 0 8 0.318
23 78 0 8 0.318
133 158 0 8 0.316
82 206 0 8 0.316
74 129 0 8 0.316
62 77 0 8 0.313
30 97 0 8 0.313
8 70 0 8 0.313
99 198 0 8 0.31
96 189 0 8 0.31
69 188 0 8 0.31
129 206 0 8 0.308
82 152 0 8 0.308
77 203 0 8 0.308
19 55 0 8 0.308
92 152 0 8 0.305
72 170 0 8 0.305
72 166 0 8 0.305
68 129 0 8 0.305
77 188 0 8 0.303
63 188 0 8 0.303
END