;  SAM: /projects/compbio/programs/hmm-server-2.0/bin/i686/prettyalign v3.2.1 (Noverber 14, 2000) compiled 11/17/00_00:59:04
;  (c) 1992-2000 Regents of the University of California, Santa Cruz
;
;          Sequence Alignment and Modeling Software System
;         http://www.cse.ucsc.edu/research/compbio/sam.html
;
; ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
; R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
;  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
; K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
;  remote protein homologies, Bioinformatics 14(10):846-856, 1999.
; A. Krogh et al., Hidden Markov models in computational biology:
;  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
; ---------------------------------------------------------------------
; Sequences correspond to the following labels:
; 1 T0197
; 2 1ewjA
; 3 1ecsA
                   10        20         30        40        50        6
                   |         |          |         |         |         
   1 ah8hgSEVEIKFKIKLEDFLHTLNTFNPEFVRYEeQEDVYFEVPRPKLLRIRGVHNLKKYYLTFK
   2 .....MTDQATPNLPSRDFDSTAA-FYERL----.GFGIVFR-DAGWMILQRGDLMLE---FFAH
   3 .....MTDQATPNLPSRDFDSTAA-FYERL----.GFGIVFR-DAGWMILQRGDLMLE---FFAH


      0        70        80        90       100       110       120    
     |         |         |         |         |         |         |    
   1 EILDENNEEFYEVEFEIGDFEKAVEVFKRLGFKIQATIKKKRWVYKLNGVTLEVNRVEGIGDFVD
   2 PGLDPL-ASWFSCCLRLDDLAEFYR------------------QCKSVGIQ------ETSSGYPR
   3 PGLDPL-ASWFSCCLRLDDLAEFYR------------------QCKSVGIQ------ETSSGYPR


         130        140       150       160         
          |          |         |         |         
   1 IEVISDSPEeAKEKIWEVAKMLGLKEEDVEPRLYLELINELSGRSS
   2 IHAPE----.-LQEWG--GTMAALVDPDGT--LLRLIQNELLAGIS
   3 IHAPE----.-LQGWG--GTMAALVDPDGT--LLRLIQNELLAGIS