Citations (SAM, SAM-T99, HMMs)
10 20 30 40 50
| | | | |
1 AHHHHHHGSEVEIKFKI....KLEDFLHTL....NTFN..PEFVRYEEQE.DVYFEVPRPKLL..
2 ---------EVEIKFKI....KLEDFLHTL....NTFN..PEFVRYEEQE.DVYFEVPRPKLL..
3 ---------EIEVKFRV....NFEDIKRKI....EGLG..AKFFGIEEQE.DVYFELPSPKLL..
4 --QHFQGRFEVEFKYRLg...DVEAFTTAL....AALN..PEVMLERNQEqDTYFDTPDRSLS..
5 -------MIEVEIKVKId...DKNKVVEQL....KKLG..FKFIKKKFQE.DIYFNGIDRDFRet
6 -------MIEVEVKAKIh...DRDEMVDRI....LSVG..GVHVSDEEQH.DLYFNAPHRDFArt
7 -SQHFQGRFEVEFKYRLs...DVDAFTCAL....AALN..PEVMLEDNQEqDSYFDTPEHSLA..
8 --AHFNGKFEVELKYRLa...DREAFWARL....SAKS..PEVMLEDNLEhDCYFDSPSASLA..
9 ----------IEIKARAq...HFEQLRERA....AQLA..PDAPLIFRQQ.DFFYDVPRGRLK..
10 ---------EIEIKFRVs...--EDIKERL....ESLN..AKFVGLEVQE.DVYFDVPLPKLL..
11 ----------IEIKARAr...EFDRLREQA....AMLA..TEAPLFYRQQ.DFFYDVPRGRLK..
12 ----------IEIKARAr...EFDQLREQA....ARLA..TEAPLFYRQQ.DFFYDVPRGRLK..
13 --AHFQGQFEVELKYRVk...NHDAFLNMV....KQIE..HEVMFENNQEsDWFYDTPQRTLT..
14 -------MIEVEVKVRA....DHSKIRPVL....MEMG..ASKIGVEEQS.DVYFAAPYRDFAkt
15 -TEHFKGKYEVELKYRLt...SKTQFLSYL....QAMN..PEVMLEDNLEhDCYFDCVGNPLK..
16 ----------VEIKARLd...SIGAIESRV....AALA..NSGPERIEQD.DTFFPCSNGRLK..
17 --------IEREIKIKLisp.NIEELEKIL....NIK-..YKLFNEEHQI.DIYYNSPVRDFRkt
18 ----------IEIKARIa...CVEALIPRA....AAVA..DHGPELIEQD.DTFFPCPNGRLK..
19 -------MIEKEVKIVV....EYPSLEELR....ESLGkdMKLLDVEKQE.DVYFNYVYRNFKit
20 -SEHFVGKYEVELKFRVm...DLTTLHEQL....VAQK..ATAFTLNNHEkDIYLDANGQDLA..
21 ----------VEIKAKVq...NLDETVRRA....VEIS..GKQPTILKQH.DIFYESPNGRLK..
22 ----------VEIKAKVq...NLDETVRRA....VEIS..GKQPTILKQH.DIFYESPNGRLK..
23 -------MYEVELKGYA....NDEIFERVR....EKF-..-EFMRREIHE.DIYYQHPCRDFSkt
24 ---------EVEAKFPYre..GVEEKVKEI....AEL-..---IIEKFEH.DIYFSHPCRDFAss
25 ----------VEIKAKVq...NHDETVRRA....VEIS..GKQPTILKQH.DIFYESPNGRLK..
26 ----GGAMYEVELKGYA....NDEIFERVR....EKF-..-EFMRREIHE.DIYYQHPCRDFSkt
27 -------MYEVEVKVKLk...NPEDVRKRL....EEL-..GEKVRTVRQR.DLYYQHPCRDFAet
28 -------MFEIELKFRVg...DGSELRERL....AEND..AVLVSENENQ.DTYYNHPSRDFAes
29 -------MIEVEVKVRA....DHSKIRPLL....EKIG..ANKIGVEEQS.DTYFSAPYRDFAnt
30 ---CLKIMIEIEVKVRT....DHSKARPIL....KKIG..AVKLGVENQS.DVYFAAPHRDFAkt
31 -------MLEVEVKYRA....DLSLVKNRL....QHLG..FSPVSVVYEE.DVYFQHPCRDFSat
32 ----------VEIKARVr...DAAALSARA....AALT..DAGPEHIEQD.DTFFACAHGRLK..
33 -------MYEVELKGYA....NDEIFEKVR....ETF-..-EFMRKEIHE.DIYYQHPCRDFSkt
34 -------MKELETRIIDi...DVEKLRETL....NKLG..AKNVKRENQT.NDIFDFPDRKLLd1
35 -------MKEAETRIIDi...DVENIRTIL....KSVN..AINIKKENQV.NDIYDFENGKLLdn
36 ----------VEVKARIpg..GSEGFEQRLilarNLSG..SQDAQLIEQR.DVFFESPLGGRL..
37 -------MYEVELKGYA....NEEIFEKVR....ETY-..-RFMRREIHE.DIYYQHPCRDFSkt
38 -------MIEVEIKVSLkde.DSKKILEKL....KSSG..FEKEETKEQI.DTYFNGIDRDFQvt
39 --------KELEVKILNi...HLGNIRNKV....KTLN..CKNVKKENQI.NKIFDFKNNTLLq1
40 -------MFEIESKAFI....PTKELKRII....KLANkkFKFIKEEIKT.DXYYS-NQKKII..
41 ----------VELKARLdgeeGYERRVAIA....KQLT..GADGTVITQR.DVFFHATTGRLK..
42 -------MFEIESKAFI....PTKELKRII....KLANkkFKFIKEEIKT.DIYYS-NQKKII..
43 -------MYEVEVKVPG....EYETVRAAL....ADVD..AAEHTTVAQA.DTYYDAPHRAFEq1
44 -----------------....-------AL....RDAG..LYLEGERLEV.DIYYRHPCRDMLsr
45 ---------EVEVKLRLl...TAAAHLRLT....TLLT..PYHLKTLHQR.NTFFDTPKNDLS..
46 -----------------....---------....----..----------.------------..
47 --------KEIEKKFIV....SGDAYKSLA....KGV-..-----LYRQG.YIFFD----KDK..
48 -----------------....---------....----..----------.------------..
49 -----------------....---------....----..----------.------------..
60 70 80 90
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1 ...RIRGVHNL....K.....KYYLTFKEI...LDENN..EEFYEVEFEIGD.....FEKAVEVF
2 ...RIRGVHNL....K.....KYYLTFKEI...LDENN..EEFYEVEFEIGD.....FEKAVEVF
3 ...RVRKINNT....G.....KSYITYKEI...LDKRN..EEFYELEFEVQD.....PEGAIELF
4 ...AAGKSLLI....R.....AMQPSGIQLw..IVKGP..EPDRCEAVNITD.....ADKAISML
5 de.ALRIRDED....G.....NFFVTYKGPk..IDKIS..KTREEIEVKIED.....KEKMRQIF
6 de.ALRIRRSG....G.....RTFITYKGPk..IDEES..KTRKELETEVAD.....PGTAAEIL
7 ...AEGKSLVI....R.....TMQPSGIQLw..IVKGP..EADRCEAVNITD.....ADKAASML
8 ...AQHKSLCI....R.....EMQPSGIRLw..IVKGP..EKDRCEAVNITD.....ANKAKSML
9 ...LRQFDDGT....P.....AELIFYQRD...DRDGP..KASYYTRSPVTN.....PEAMHALL
10 ...RVRRISNL....G.....KSYITYKEI...MDRNN..EEFYEVEFEVSD.....FNLAIEVF
11 ...LRRFEDGT....P.....AELIFYQRD...DRDGP..KASYYTRSPVTN.....PDAMHALL
12 ...LRRFEDGT....P.....AELIFYQRD...DRDGP..KASYYTRSPVTN.....PDAMHALL
13 ...QQGKSLVL....R.....EIQPAGIKLw..IVKGP..EADRCEATNITK.....LDSAQSML
14 de.ALRIRSLG....G.....HSVLTYKGPk..LDKVS..KTRVEIETPVDG.....TATA-KIF
15 ...NQNKSVCI....R.....NMQPSGIKLw..IVKGP..EADRCEAVNITD.....SDKAKSML
16 ...-LRAFGPD....R.....GQLIFYARA...DQAGP..KESFYILSPTAS.....PDTLRAAL
17 de.ALRLRLVN....N.....EVELTYKGPk..LSSES..KSREEITVKIDN.....LDSMDLIL
18 ...-LRAFSAD....Q.....GQLIFYSRP...DQTGP..KESFYILSPTAS.....PDTLRAAL
19 de.AVRIRINN....K.....GIELTYKGPk..LHSSL..KAREEISITVND.....LNKTIELL
20 ...DQQISMVL....R.....EMNPSGIRLw..IVKGP..GAERCEASNIED.....VSKVQSML
21 ...MRSVEENGva..H.....TELIWYDRS...DVAGP..KLSNFNKFDVPSev...LDALKLSL
22 ...MRSVEENGva..H.....TELIWYDRS...DVAGP..KLSNFNKFDVPSev...LDALKLSL
23 8riRIKRFNGH....F.....EAFLTYKGPk..IDERS..KTRLEIEVEIDD.....VDKYSQLL
24 de.ALRIRQDV....E.....GITLTYKGPk..VDVET..KSREEVKLKVEN.....FEAAKQIL
25 ...MRSVEENGva..L.....TELIWYDRP...DVAGP..KLSNFNKFDVPVev...LDALKLSL
26 8riRIKRFNGH....F.....EAFLTYKGPk..IDERS..KTRLEIEVEIDD.....VDKYSQLL
27 de.ALRLRCSD....D.....KVALTYKGP...KVGRE..KSRVELEVVVDD.....FETTDAIL
28 ge.ALRVRRID....G.....TPLVTYKGSk..RPGAV..KAREELEWRLDPgdpt.GESMETLF
29 de.ALRIRSLG....G.....QAVLTYKGPk..LDKVS..KTREELETPVDE.....AT-TAKIF
30 de.ALRIRSLN....D.....QAVLTYKGPk..LDGIS..KTREELETPVDE.....A-TTTQIL
31 de.ALRVRISE....G.....RVTVTYKGPr..MGAGA..KTRLEVSAQAS-.....-GEVVELL
32 ...-LRRFSAE....H.....GHLIHYFRA...DVAGP..RLSDFHIVPTDA.....PDALRETL
33 8riRIKRFNGH....N.....EVFLTYKGPk..IDEKS..KTRLEIEVEIQEd....VDKYFELL
34 0rtVEDLINNK....T.....VYFMTTKKMl..SQDKF..KVMEENETIIED.....GAMGKNIF
35 6yaRIRIVENMldkkN.....HYFMTVKKMl..SQEKF..KVMDEHEIEISD.....PSEGEEIF
36 ...KLRYLQTPs...R.....SQLVYYDRP...DVAGP..KLSKFNKTEVDE.....PEVLEKIL
37 8riRIKRFNGH....H.....EVFLTYKGPk..LDKRS..KTRLEIEVEIQD.....TEKYFQLL
38 6alRIRKSLNLdsnkG.....TIYVTYKGKk..LDAIS..KTREEIEVEILD.....MALMYNIF
39 0riVEDLILNS....N.....RYYMTVKKLl..SENTF..KIMDEHEIEISN.....FQEGENIF
40 ...RIRKLNTL....E.....KIVTFKKKI...LDNNNtvEINKEIEFKIDS.....INNFLTLI
41 ...-LRYLEDK....P.....SELISYDRS...DVAGP..KLSLYSKMDVAE.....PAMLEQIL
42 ...RIRKLNTL....E.....KIVTFKKKI...LDNNNtvEINKEIEFKIDS.....INNFLTLI
43 3at--------....-a27dgESRVTYKGPl..VEAES..KTREEFETAVGD.....DAQMAAII
44 de.ALRLRVYEd...N.....GGRLTYKGPr..MGGGF..KAREEVEIELTR.....VEEARLLL
45 ...LRRAVLRL....Rf21slKAKPTLANG...ISRVE..EDEEEIEYWIGKec9klSDIGSRVL
46 ...-LRLRASG....D.....SLKLIAKGPtqlSADGI..RSRREIEVPLSPqv...LEAARSLV
47 ...SVRVRVFN....D.....KGYLTVKGT...STGIS..RLEYEYEIPVGE.....ANEILEYL
48 ...--------....S.....GQLIFYERP...DTDGP..KLSRYSISPTSD.....PSGLRTVL
49 ...--------....-.....---------...-----..------------.....--------
100 110 120 130 140
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1 KR.....LGFKIQ..ATIKKKRWVYKLN....GVTLEVNRVE.GIG..DFVDIEVISDSP.....
2 KR.....LGFKIQ..ATIKKKRWVYKLN....GVTLEVNRVE.GIG..DFVDIEVISDSP.....
3 KR.....LGFKVQ..GVVKKRRWIYKLN....NVTFELNRVE.KAG..DFLDIEVITSNP.....
4 HT.....LGYQPI..LTLRKVRSIYFVG....PFHVTLDHLA.GLG..DFAELAIMTDDEtll..
5 KK.....LGFKEV..PPIRKIREIYKKE....DIEASIDDVE.GLG..LFLELEKSISDInek..
6 ES.....LGFRMV..REVVKERRIYSVG....EFTVSIDTVM.GLG..TYLEIERDLPDGsdy..
7 RT.....LGYRQV..LAISKRRSIYFVG....PFHVTRDHLE.GIG..DFAELAIMTDDEall..
8 RT.....LGYQCV..LEIKKRRSVYFLG....QFHLTLDRLE.GLG..DFAELAIMTDDEaml..
9 AT.....-ALTTR..GIVTKERHVYLTG....RTRIHLDRVD.GLG..DFVELEVVLAQDdde..
10 KR.....LGFDVK..ASIKKERLIYKLG....DVTFELNKIP.GLG..NFLDIEVISDDP.....
11 AT.....-ALTTR..GIVTKERHVYLAG....RTRIHLDRVD.GLG..DFIELEVVLAPDdde..
12 AT.....-ALTTR..GIVTKERHVYLAG....RTRIHLDRVD.GLG..DFIELEVVLGPDdde..
13 EN.....MGYEVI..QCSKKIRSIFFVG....EFHITLDFLD.GFG..HFAEFAIMTDDEtal..
14 HS.....LGFLEA..GAVRKKRDIFRAG....EIIVCLDAVE.GLG..EFLEVELDVEDKkdl..
15 LT.....MGFNLV..LELRKTRSIYFIG....KFHATVDHLE.GLG..DFAELAIMTDDEsml..
16 AA.....-AQGEV..GRVRKLRTLYLVG....RTRVHLDRVE.GLG..DFLELEVVLADDesv..
17 QR.....LGFIKV..LKIEKIRKNYKIN....NFTVSLDRVF.DLG..DFVEIEGIDITD.....
18 VS.....-AHGER..GRVRKVRTLFLVG....RTRVHLDRVE.GLG..DFLELEVVLREGepa..
19 RK.....IGFYPV..ITIKKTRINYLDK....SFIVSLDLVK.DLG..QFIEIEAINEISd....
20 AT.....LGYHPA..FTIEKQRSIYFVG....KFHITVDHLT.GLG..DFAEIAIMTDDAtel..
21 QS.....-SMGVK..GEVKKTRTLVLHG....QTRIHIDRVD.GLG..DFMELEVCLSPEetp..
22 QS.....-SMGVK..GEVKKTRTLVLHG....QTRIHIDRVD.GLG..DFMELEVCLSPEetp..
23 EL.....LGFREI..LTITKTREKYYVEk...GVTITLDDVE.GLG..KFVEIETLVKNEeei..
24 EK.....LGFRAV..AEVKKLRRIYGLC....EAIICLDDVE.GLG..KFVEIEVEADNI.....
25 ES.....-SMGIK..GEVKKTRTLVLHN....QTRIHIDRVD.GLG..DFMELEVCLAPEetp..
26 EL.....LGFREI..LTITKTREKYYVEk...GVTITLDDVE.GLG..KFVEIETLVKNEeei..
27 RH.....LGFEPLehAEVKKLRTVYTLEvngeKVVAALDEVE.GLG..TFLELECKADDEsev..
28 DR.....LGFRKV..ATVTKQRETFHLGssn.PMTVTIDRVE.GLG..EFAEIERVLHEGsp7av
29 RA.....LGFSEA..GAVRKKREIFRAG....EVIVCLDAVE.GLG..EFLEVELDVEDEkdl..
30 HA.....LGFSEA..GVVRKKREVFRAE....EITVCLDAVE.GLG..EFLEVEIVAENEkel..
31 NR.....LGFKAV..AVIKKRREYYRNG....DVLLSLDYVE.GLG..EFVEIEKMVEEEsqi..
32 TA.....-ALGAT..GRVIKTRRLYIAG....QTRIHVDAVQ.GLG..DFVELEVMLRDDqse..
33 DR.....LGFKEV..LKVVKTREKYYVEk...GVTITLDEVE.GLG..KFIEIETLVKEKdei..
34 KS.....LGLELF..ETIKKYRESYKYK....DSLIEIDINDpSFC..PFPYIEIETSSE.....
35 KA.....LGLVKK..QSIKKYRESYKYK....NSLIEIDINDkDFC..PFPYIEIET---.....
36 SQ.....-SNGVL..GVLAKRRHLFLCG....QTRIHLDEVK.DLG..YFMELEVCLTEDqtl..
37 QN.....LGFREV..LRIVKTREKYYVDk...GITITLDEVE.GLG..KFIEIETLVKEKeei..
38 EK.....LGFKPV..HPIRKIRKIYKKE....DIEVSFDTVD.CVG..DYLEIEKVVDDDskr..
39 KA.....LGLEMT..QCIKKYRESYKYK....NSLIEIDINDkSFC..PFPYIEIESPNE.....
40 KE.....LKFKKL..YKKIKKSLIYQTN....NLNVEINEIK.NLG..FFLEIEKIINNQndi..
41 AE.....-TVGVR..GRLNKRRLLFLHG....QTRIHLDVVE.SLG..HFMEFEVVLEPEqtl..
42 KE.....LKFKKL..YKKIKKSLIYQTN....NLNVEINEIK.NLG..FFLEIEKIINNQndi..
43 EQ.....LGFESA..AVVRKLRTKHHFE....GFTVLLDAVE.DVG..EYVEIETTVEAEhav..
44 AR.....LGFEET..LVVRKRRKYYRGE....GVLVTLDNVE.SLG..CFVEVEA---ED.....
45 KRv10dfLGFVCL..GGFENVRNVYEWR....GVKLEVDETKyDFG..NCYEIECETEEP.....
46 QL.....IATDAL..PAMRRTRSVWKLGe...DAEVVLDDLD.ALPkePFVELEILASDQ.....
47 CE.....-----K..PVIEKLRYKFQFE....GFTWEVDEF-.---..------------.....
48 SD.....-ALGVK..GEVRKERRLFLIG....QTRIHLDTVE.GLG..TFMELEVVN---.....
49 --.....------..---KKTRDIYKFD....EITICFDNVE.GLG..EFVEVELVADSDi....
150 160 170
| | |
1 EEAKEKIWEVAKMLGLKEEDVEPRLYLELINELSGRSS
2 EEAKEKIWEVAKMLGLKEEDVEPRLYLELINELSGRS-
3 EEGKKIIWDVARRLGLKEEDVEPKLYIELI--------
4 PDYRQQLLSLAAQLGLDPDRLETRSYRTLCEQATTPS-
5 DKVLEEMMEILKALNISKDNIIRKSYLEL---------
6 AGALREIFELYRKLGI-EDGFERRSYLELL--------
7 PDYRQQLQDLATRLGLSSAQLETRSYRTLCE-------
8 PVYEAQLVALAAELGLNESQREFLSYRQL---------
9 EDGHAEAHAMFATLGVPESDLVAVAYVDLLSPDSEP--
10 EEAKRKIWEVAEKLGLKKKDVEPRLYIELVNELSSRS-
11 ADGEAEAHRVFAQLGVAQEDLVAVAYVDLLNADA----
12 AGGEAEAHDVFAKLGVSQDDLVAVAYVDLLNADT----
13 ARYRERLVALAQQFHLSEADREHRSYKEIL--------
14 ESSRAELFKFLSQFGLSEKDSIRTSYLEMVLE------
15 EQYKQELLELAAKLRLTDAQLESRSYREM---------
16 AAGVAEAHGLLERLGVEAGALIEGAYVDLL--------
17 EELINFVNNFLKEYNI-EGEKTLKSYLELLVDKLEKE-
18 EAGVAEAHGLMARLGVNHDALIEGAYVDLLT-------
19 QEIQNYTSNFIRKYKI-KGKLTTKSYLELLIDKYEAS-
20 DKLKAECRDFANTFGLQVDQQEPRSYRQLL--------
21 EHGEKIAHEIRELLAVPETDLLTGAYMDML--------
22 EHGEKIAHEIRELLAVPETDLLTGAYMDML--------
23 PQAVEKLEAILREIGV--EQFERRSYLELLVEKLER--
24 -DAKEKVFSIAEQLGYSRNESIRDSYLELILQKKS---
25 EHGEKIAHELREQLAVPETDLLTGAYMDML--------
26 PQAVEKLEAILREIGV--EQFERRSYLELLVEKLER--
27 DEKEKLLVSILEELRV-EGKRVRHSYLEMLLD------
28 EKAREEVLNLASELGL--KSPESRSYLRMQLE------
29 ESSREKLFEFLSQFGVDEKDSIRTSYLEMVL-------
30 ETSRAKLFELLKQFGAGEKDSIRTSYLEMVLE------
31 ASAIEEIRRLASTLGL--AEEVRETYLELYFNTFKS--
32 ADGTRIAHAWMTSLGIAEADLLDVAYIDLL--------
33 PEAVEKLEKILRELGV--EKFERRSYLELLLEK-----
34 EKLNEILID----LGYSMEDTTSKTIYEILKDK-----
35 -AFENELEDIVKLLGYSMEDTSSKTIYEILNEK-----
36 EEGQAIAEKLSRELGIQEADLMIGSYFD----------
37 PRTVEKLEGILRNLGV--ERFERKSYLELLLEASQK--
38 EQALLELLDLLKSLNISSDKLEKRSYLELWRGN-----
39 EELEEIVH----LLGYSIKDTTSKNIYELI--------
40 DLAKKEIDNIINQFGL-KENIETRPYSELL--------
41 AQGQSIVDEMKRLFELSDADLMTGAYI-----------
42 DLAKKEIDNIINQFGL-KENIETRPYSELL--------
43 SGAREDAYAVLRRLGLDPTDQIRTSYLGL---------
44 PGGIEMLESLLKL----EDRRVDETYAEMALKNMGRR-
45 ERVKTMIEEFLT--------------------------
46 AAALSRLRTWEERLGLDPTWQEVKSYAQILSELISPP-
47 --------------------------------------
48 --------------------------------------
49 EAHRERLFEFLESMGIKKEDSIRTSYLEML--------