# List of top-scoring protein chains for T0197.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1l9aA 87 1.37e+00 d.201.1.1 73710 1ku9A 152 1.67e+00 a.4.5.36 77544 1lngA 87 1.88e+00 d.201.1.1 74045 1oj6A 151 2.71e+00 2hft 218 3.03e+00 1boy b.1.2.1 21951 b.1.2.1 21952 1fakT 206 3.14e+00 1boy b.1.2.1 21957 b.1.2.1 21958 1jpsT 219 3.42e+00 b.1.2.1 67049 b.1.2.1 67050 1o5uA 101 4.51e+00 1dkiA 371 6.19e+00 1dkiA d.3.1.1 37090 1rwsA 77 7.21e+00 1a21A 219 7.50e+00 1boy b.1.2.1 21967 b.1.2.1 21968 5mdhA 333 8.72e+00 1bmdA c.2.1.5 30126 d.162.1.1 42093 4mdhA 334 8.75e+00 1bmdA c.2.1.5 30128 d.162.1.1 42095 1danU 121 8.81e+00 1boy b.1.2.1 21954 1iznB 277 9.57e+00 e.43.1.2 83848 1jeoA 180 1.00e+01 c.80.1.3 66611 1chvS 60 1.14e+01 1tgxA g.7.1.1 44438 1lknA 89 1.21e+01 b.82.1.8 84624 1dtdA 303 1.29e+01 1aye c.56.5.1 33823 1o8bA 219 1.38e+01 c.35.1.2 81180 d.58.40.1 81181 1dq3A 454 1.43e+01 1dq3A b.86.1.2 28380 d.50.3.1 38798 d.95.2.2 40585 d.95.2.2 40586 1rue1 289 1.61e+01 1pov1 1mwwA 128 1.71e+01 1uz5A 402 1.80e+01 1rztA 331 1.86e+01 3rpbA 140 1.98e+01 1rsy b.7.1.2 23199 1e09A 159 2.06e+01 1bv1 d.129.3.1 59146 1d8hA 311 2.12e+01 1d8iA d.63.1.1 39544 1h2oA 159 2.12e+01 1hrpA 92 2.17e+01 1hcnA g.17.1.4 44811 1gv9A 260 2.26e+01 b.29.1.13 70596 1r1zA 263 2.27e+01 1k3eA 156 2.30e+01 d.198.1.1 68103 1oxnA 140 2.38e+01 1nunA 145 2.39e+01 b.42.1.1 80734 1gnyA 153 2.44e+01 b.18.1.11 65404 1kao 167 2.47e+01 1ctqA c.37.1.8 32014 1hcnA 92 2.50e+01 1hcnA g.17.1.4 44809 1qr4A 186 2.54e+01 1qr4B b.1.2.1 21986 b.1.2.1 21987 1v5uA 117 2.65e+01 1p5sA 203 2.82e+01 1avqA 228 2.99e+01 1avqA c.52.1.13 33326 1rhi1 288 3.19e+01 1pov1 1eofA 100 3.26e+01 1t1dA d.42.1.2 38640 1umnA 165 3.37e+01 1nowA 507 3.38e+01 c.1.8.6 85936 d.92.2.1 85937 1o7aA 515 3.52e+01 1s96A 219 3.53e+01 1m4uA 206 3.55e+01 g.17.1.7 78625 1spgA 144 3.62e+01 1abwA a.1.1.2 15409 1io2A 213 3.74e+01 1ekeA c.55.3.1 62612 1mjiA 182 3.76e+01 d.77.1.1 79208 1o7dB 84 3.78e+01 a.8.3.1 86639 1s1iJ 173 3.87e+01 1r53A 382 3.90e+01 1bg3A 918 3.99e+01 1qhaA c.55.1.3 33491 c.55.1.3 33492 c.55.1.3 33493 c.55.1.3 33494