# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1d8iA 311 1.96e-01 1d8iA d.63.1.1 39541 1d8hA 311 3.19e-01 1d8iA d.63.1.1 39544 1gm6A 175 1.00e+00 b.60.1.1 70272 1pysA 350 1.76e+00 1pysA d.104.1.1 40775 1lngA 87 2.29e+00 d.201.1.1 74045 1cjxA 357 2.86e+00 1cjxA d.32.1.3 38516 d.32.1.3 38517 1tdj 514 3.37e+00 1tdj c.79.1.1 35297 d.58.18.2 39356 d.58.18.2 39357 1kr4A 125 3.43e+00 d.58.5.2 72889 1sqc 631 3.66e+00 2sqcA a.102.4.2 18858 a.102.4.2 18859 1rwsA 77 3.86e+00 1v8cA 168 4.64e+00 1k7jA 206 4.89e+00 d.115.1.1 72103 1o5uA 101 5.01e+00 1rhs 296 5.16e+00 1rhs c.46.1.2 32703 c.46.1.2 32704 1k3eA 156 6.25e+00 d.198.1.1 68103 1kk9A 221 6.26e+00 d.115.1.1 77432 1b7yA 350 6.28e+00 1pysA d.104.1.1 40776 1g8lA 411 7.87e+00 1g8lA b.85.6.1 60365 b.103.1.1 60366 c.57.1.2 60367 1o4sA 389 8.08e+00 c.67.1.1 86620 1gtdA 85 8.18e+00 d.58.45.1 76344 1a88A 275 8.26e+00 1brt c.69.1.12 34707 1ew3A 159 8.30e+00 1mup b.60.1.1 27114 1ukuA 102 8.58e+00 1jeoA 180 8.87e+00 c.80.1.3 66611 1rhd 293 9.11e+00 1rhs c.46.1.2 32715 c.46.1.2 32716 2sqcA 631 9.37e+00 2sqcA a.102.4.2 18854 a.102.4.2 18855 1esgA 213 9.57e+00 1bam c.52.1.3 33286 1hn2A 159 1.11e+01 b.60.1.1 65890 1gt1A 159 1.11e+01 1aw0 72 1.13e+01 1aw0 d.58.17.1 39342 1j6uA 469 1.15e+01 c.5.1.1 77094 c.59.1.1 77095 c.72.2.1 77096 1eg5A 384 1.15e+01 1ecxA c.67.1.3 34429 1ag9A 175 1.20e+01 1rcf c.23.5.1 31178 1j5yA 187 1.21e+01 a.4.5.1 71592 d.94.2.1 71593 1lfpA 249 1.26e+01 e.39.1.1 73885 1imuA 107 1.28e+01 d.204.1.1 66218 1ecxA 384 1.29e+01 1ecxA c.67.1.3 34431 1jwyB 315 1.30e+01 c.37.1.8 67401 1ex2A 189 1.33e+01 1ex2A c.51.4.2 33225 3bamB 213 1.51e+01 1bam c.52.1.3 33289 3bamA 213 1.53e+01 1bam c.52.1.3 33288 1j9bA 141 1.62e+01 c.47.1.12 66459 1s7jA 262 1.63e+01 1n7oA 721 1.72e+01 a.102.3.2 80259 b.24.1.1 80260 b.30.5.2 80261 2ay1A 394 1.73e+01 1ajsA c.67.1.1 34357 1p9vA 310 1.78e+01 d.21.1.2 88007 d.21.1.2 88008 1sdjA 310 1.78e+01 1hkbA 917 1.79e+01 1qhaA c.55.1.3 33479 c.55.1.3 33480 c.55.1.3 33481 c.55.1.3 33482 1c0aA 585 1.85e+01 1c0aA b.40.4.1 25246 d.74.4.1 39731 d.104.1.1 40767 1dwnA 127 1.88e+01 1dwnA d.85.1.1 40141 1dgkN 917 1.89e+01 1qhaA c.55.1.3 33487 c.55.1.3 33488 c.55.1.3 33489 c.55.1.3 33490 1gseA 221 1.94e+01 1pgtA a.45.1.1 17667 c.47.1.5 32961 1sqsA 242 1.99e+01 1p8kZ 254 2.00e+01 1o26A 232 2.01e+01 d.207.1.1 86566 1cznA 169 2.01e+01 1rcf c.23.5.1 31181 1ofv 169 2.01e+01 1rcf c.23.5.1 31184 1c3pA 375 2.04e+01 1c3pA c.42.1.2 32606 1k3lA 221 2.04e+01 a.45.1.1 77229 c.47.1.5 77230 1k3yA 221 2.04e+01 a.45.1.1 77245 c.47.1.5 77246 1eguA 731 2.05e+01 1eguA a.102.3.2 18850 b.24.1.1 23899 b.30.5.2 24423 1oglA 283 2.07e+01 1oz9A 150 2.09e+01 1j0hA 588 2.11e+01 b.1.18.2 77027 b.71.1.1 77028 c.1.8.1 77029 1r6lA 239 2.19e+01 1ry9A 145 2.23e+01 1r9cA 139 2.25e+01 1czaN 917 2.28e+01 1qhaA c.55.1.3 33463 c.55.1.3 33464 c.55.1.3 33465 c.55.1.3 33466 1k8wA 327 2.35e+01 b.122.1.1 83094 d.58.35.2 68317 d.58.35.2 83095 1bed 181 2.36e+01 1fvkA a.44.1.1 17514 c.47.1.4 32808 1f1xA 322 2.43e+01 d.32.1.3 83208 d.32.1.3 83209 1cm5A 759 2.45e+01 1cm5A c.7.1.1 30671 1bp7A 152 2.48e+01 1bp7A d.95.2.1 40568 1d7qA 143 2.48e+01 1d7qA b.40.4.5 25331 1hkcA 917 2.49e+01 1qhaA c.55.1.3 33475 c.55.1.3 33476 c.55.1.3 33477 c.55.1.3 33478 1ax4A 467 2.51e+01 1ax4A c.67.1.2 34391 1jyhA 157 2.51e+01 d.60.1.3 71956 1l6rA 227 2.54e+01 c.108.1.10 77768 1mi1A 414 2.54e+01 a.169.1.1 79137 b.55.1.6 79138 1g9zA 152 2.57e+01 1bp7A d.95.2.1 60408 1by2 119 2.59e+01 1by2 d.170.1.1 42452 2pflA 759 2.60e+01 1cm5A c.7.1.1 30675 1rcf 169 2.65e+01 1rcf c.23.5.1 31170 1oboA 169 2.67e+01 c.23.5.1 86776 1g2qA 187 2.70e+01 c.61.1.1 65117 1h16A 759 2.70e+01 c.7.1.1 76462 3pflA 759 2.71e+01 1cm5A c.7.1.1 30673 1qgxA 357 2.77e+01 1qgxA e.7.1.1 42973 1ka1A 357 2.77e+01 e.7.1.1 68369 7odcA 424 2.80e+01 7odcA b.49.2.3 26488 c.1.6.1 28650 1m4uA 206 2.86e+01 g.17.1.7 78625 1bndA 119 2.87e+01 1bndA g.17.1.3 44793 1af5 126 2.95e+01 1bp7A d.95.2.1 40572 1a8s 273 2.99e+01 1brt c.69.1.12 34710 1aym3 238 3.05e+01 1aym3 1rkqA 282 3.05e+01 1iq4A 179 3.06e+01 1iq4A d.77.1.1 62641 1smrA 335 3.08e+01 1smrA b.50.1.2 26878 1ks2A 219 3.10e+01 c.35.1.2 72908 d.58.40.1 72909 1lkzA 219 3.12e+01 c.35.1.2 73991 d.58.40.1 73992 1ejdA 419 3.12e+01 1uae d.68.2.2 39576 1hbkA 94 3.14e+01 1aca a.11.1.1 60887 1jx2B 315 3.16e+01 c.37.1.8 67404 1ii7A 333 3.19e+01 1ii7A d.159.1.4 62415 1tplA 426 3.21e+01 1ax4A c.67.1.2 34387 1i4uA 181 3.33e+01 b.60.1.1 61732 1r6uA 437 3.38e+01 1aw5 326 3.46e+01 1b4kA c.1.10.3 29181 1q5yA 85 3.52e+01 1atiA 505 3.55e+01 1atiA c.51.1.1 33196 d.104.1.1 40745 1ah6 220 3.60e+01 1yer d.122.1.1 41094 1uteA 313 3.61e+01 1uteA d.159.1.1 42078 1qs1A 462 3.64e+01 1qs1A d.166.1.1 42260 d.166.1.1 42261 1tdtA 259 3.65e+01 3tdt b.81.1.2 28055 1h72C 296 3.66e+01 d.14.1.5 60712 d.58.26.1 60713 1pgtA 210 3.73e+01 1pgtA a.45.1.1 17515 c.47.1.5 32809 1iu9A 111 3.75e+01 1opd 85 3.85e+01 1ptf d.94.1.1 40560 1fjgD 209 3.88e+01 1c05A d.66.1.2 39553 1on2A 142 3.94e+01 a.4.5.24 87103 a.76.1.1 87104 1jflA 228 3.95e+01 c.78.2.1 71656 c.78.2.1 71657 1ewqA 765 3.97e+01 1ewqA a.113.1.1 19069 c.37.1.12 32383 c.55.6.1 33740 d.75.2.1 39743