# List of top-scoring protein chains for T0197.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1m7xA 617 1.86e+00 b.1.18.2 78749 b.71.1.1 78750 c.1.8.1 78751 1qs0B 338 2.90e+00 1qs0B c.36.1.7 31830 c.48.1.2 33103 1kdxA 81 3.29e+00 1kdxA a.12.1.1 16375 1hbnC 248 3.55e+00 1mroC d.58.31.1 60902 1mroC 247 3.63e+00 1mroC d.58.31.1 39437 1bbuA 504 4.09e+00 1lylA b.40.4.1 25254 d.104.1.1 40721 1b5qA 472 4.87e+00 1b37B c.3.1.2 30404 d.16.1.5 37968 1aq6A 253 5.15e+00 1qq5A c.108.1.1 43331 1qq7A 252 5.36e+00 1qq5A c.108.1.1 43329 1qq5A 253 5.64e+00 1qq5A c.108.1.1 43327 1qgiA 259 5.77e+00 1qgiA d.2.1.7 37001 1qe0A 420 6.35e+00 1adjA c.51.1.1 33186 d.104.1.1 40735 1sb0A 87 6.50e+00 1nxuA 333 6.76e+00 c.122.1.1 86389 1s20A 340 7.08e+00 1e4eB 343 8.71e+00 c.30.1.2 59223 d.142.1.1 59224 1oxnA 140 9.44e+00 1k8mA 93 9.84e+00 b.84.1.1 68314 1e4eA 343 1.02e+01 1iow c.30.1.2 59221 d.142.1.1 59222 1dtdA 303 1.07e+01 1aye c.56.5.1 33823 1vi6A 208 1.20e+01 1ebdA 455 1.22e+01 1lvl c.3.1.5 30577 c.3.1.5 30578 d.87.1.1 40210 1e1oA 504 1.22e+01 1lylA b.40.4.1 25258 d.104.1.1 40714 1vjnA 220 1.40e+01 1p4oA 322 1.40e+01 d.144.1.7 87775 1os1A 540 1.41e+01 1ayl 541 1.41e+01 1ayl c.91.1.1 64718 c.109.1.1 64719 1nmoA 247 1.45e+01 1jkgA 140 1.60e+01 d.17.4.2 66795 1nzjA 298 1.68e+01 1m7nA 322 1.77e+01 d.144.1.7 78738 1l7pA 211 1.77e+01 c.108.1.4 73670 1cjcA 460 1.80e+01 1cjcA c.3.1.1 30319 c.4.1.1 30604 1j97A 210 1.80e+01 1f5sA c.108.1.4 62753 1l7mA 211 1.85e+01 c.108.1.4 73664 1d8hA 311 1.88e+01 1d8iA d.63.1.1 39544 1aye 401 1.91e+01 1aye c.56.5.1 33824 d.58.3.1 39065 1gkzA 388 1.93e+01 a.29.5.1 65268 d.122.1.4 65269 1ml6A 221 1.94e+01 a.45.1.1 85009 c.47.1.5 85010 2ay1A 394 2.02e+01 1ajsA c.67.1.1 34357 1ep3A 311 2.04e+01 2dorA c.1.4.1 28597 1k9oI 378 2.08e+01 e.1.1.1 68356 1mucA 373 2.11e+01 1mucA c.1.11.2 29236 d.54.1.1 38880 2mucA 373 2.12e+01 1mucA c.1.11.2 29241 d.54.1.1 38885 1kczA 413 2.21e+01 c.1.11.2 68451 d.54.1.1 68452 1bkhA 369 2.21e+01 1mucA c.1.11.2 29238 d.54.1.1 38882 3mucA 369 2.27e+01 1mucA c.1.11.2 29243 d.54.1.1 38887 1mpyA 307 2.27e+01 1mpyA d.32.1.3 38508 d.32.1.3 38509 1bsg 266 2.36e+01 1btl e.3.1.1 42729 1us5A 314 2.46e+01 1ku9A 152 2.47e+01 a.4.5.36 77544 1jsxA 207 2.49e+01 c.66.1.20 71846 1d4gA 430 2.57e+01 1b3rA c.2.1.4 30114 c.23.12.3 31374 1jqhA 308 2.58e+01 d.144.1.7 71793 1lqtA 456 2.65e+01 c.3.1.1 74198 c.4.1.1 74199 1nt2A 210 2.92e+01 c.66.1.3 86149 1oen 540 2.97e+01 1ayl c.91.1.1 64750 c.109.1.1 64751 1lehA 364 3.03e+01 1bw9A c.2.1.7 30268 c.58.1.1 33916 1ifa 158 3.17e+01 1ifa a.26.1.3 16892 1jjoC 261 3.19e+01 1rmi 160 3.23e+01 1ifa a.26.1.3 16891 1uedA 406 3.28e+01 1f9cA 372 3.33e+01 1mucA c.1.11.2 59728 d.54.1.1 59729 1pgzA 195 3.46e+01 2up1A 183 3.47e+01 1ha1 d.58.7.1 39151 d.58.7.1 39152 1pjcA 361 3.48e+01 1sayA c.2.1.4 30101 c.23.12.2 31361 1l3kA 196 3.50e+01 d.58.7.1 73539 d.58.7.1 73540 1l9aA 87 3.60e+01 d.201.1.1 73710 1dar 691 3.68e+01 1dar b.43.3.1 25707 c.37.1.8 32142 d.14.1.1 37547 d.58.11.1 39300 1fnmA 691 3.73e+01 1dar b.43.3.1 25709 c.37.1.8 32144 d.14.1.1 37546 d.58.11.1 39302 d.58.11.1 39303 1hey 128 3.74e+01 3chy c.23.1.1 31061 1h6zA 913 3.75e+01 c.1.12.2 70906 c.8.1.1 70907 d.142.1.5 70908 1nuoA 261 3.77e+01 a.123.1.1 86198 1j7lA 264 3.81e+01 d.144.1.6 62697 1eg7A 557 3.82e+01 1eg7A c.37.1.10 32241 1ap0 73 3.84e+01 1ap0 b.34.13.2 37475 1nscA 390 3.88e+01 2qwc b.68.1.1 27591 2efgA 691 3.95e+01 1dar b.43.3.1 25708 c.37.1.8 32143 d.14.1.1 37548 d.58.11.1 39301 1up1 182 3.96e+01 1ha1 d.58.7.1 39149 d.58.7.1 39150