# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1d8hA 311 8.31e-02 1d8iA d.63.1.1 39544 1ukuA 102 3.80e-01 1p8kZ 254 3.90e-01 1uc8A 280 8.83e-01 1jksA 294 8.99e-01 d.144.1.7 71710 1g8lA 411 1.02e+00 1g8lA b.85.6.1 60365 b.103.1.1 60366 c.57.1.2 60367 1f9zA 135 1.38e+00 1qipA d.32.1.1 38484 1fa8A 135 1.51e+00 1qipA d.32.1.1 38486 1kr4A 125 2.23e+00 d.58.5.2 72889 1cjbA 231 2.27e+00 1qk3A c.61.1.1 34079 1nnhA 294 2.52e+00 1v8cA 168 2.69e+00 1vk6A 269 3.26e+00 1j97A 211 4.19e+00 1f5sA c.108.1.4 62753 1l7mA 211 4.25e+00 c.108.1.4 73664 1hn2A 159 7.33e+00 b.60.1.1 65890 1gt1A 159 7.38e+00 1gt91 357 7.66e+00 1n0uA 842 8.76e+00 b.43.3.1 79757 c.37.1.8 79758 d.14.1.1 79759 d.58.11.1 79760 d.58.11.1 79761 1f52A 468 9.06e+00 1lgr d.15.9.1 37839 d.128.1.1 41169 1nrlA 316 9.65e+00 1nd4A 264 1.02e+01 1i05A 180 1.06e+01 1mup b.60.1.1 27130 1us5A 314 1.07e+01 1pj5A 830 1.10e+01 1i06A 180 1.20e+01 1mup b.60.1.1 27131 1ftrA 296 1.20e+01 1ftrA d.58.33.1 39485 d.58.33.1 39486 2polA 366 1.26e+01 2polA d.131.1.1 41356 d.131.1.1 41357 d.131.1.1 41358 1o0uA 429 1.28e+01 c.118.1.1 80743 1jv4A 162 1.39e+01 b.60.1.1 67343 1jyhA 157 1.46e+01 d.60.1.3 71956 1g6sA 427 1.53e+01 1eps d.68.2.2 39584 1luzA 88 1.62e+01 b.40.4.5 74271 1mup 166 1.70e+01 1mup b.60.1.1 27133 1nzjA 298 1.72e+01 1qy1A 174 1.79e+01 1dpgA 485 1.80e+01 1dpgA c.2.1.3 30074 d.81.1.5 39989 1q8yA 373 1.87e+01 1dzkA 157 1.97e+01 1obpA b.60.1.1 27096 1o5uA 101 1.99e+01 1obpA 159 2.00e+01 1obpA b.60.1.1 27092 1k8kB 394 2.10e+01 c.55.1.1 68307 1a88A 275 2.14e+01 1brt c.69.1.12 34707 1vkfA 188 2.28e+01 1jg8A 347 2.37e+01 1jg8A c.67.1.1 62946 1oi7A 288 2.43e+01 c.2.1.8 87049 c.23.4.1 87050 1k7jA 206 2.57e+01 d.115.1.1 72103 1mmiA 366 2.59e+01 1uf2C 421 2.65e+01 1lqpA 135 2.67e+01 d.32.1.2 78151 1nkiA 135 2.67e+01 1m2tB 263 2.73e+01 b.42.2.1 84762 b.42.2.1 84763 1qgiA 259 2.82e+01 1qgiA d.2.1.7 37001 1o70A 324 2.86e+01 b.118.1.1 81115 b.118.1.1 81116 2kinA 238 2.88e+01 1bg2 c.37.1.9 32190 1oj4A 283 2.99e+01 1howA 373 3.00e+01 1hcl d.144.1.7 41679 1l0wA 580 3.01e+01 b.40.4.1 73426 d.74.4.1 73427 d.104.1.1 73428 1j5yA 187 3.10e+01 a.4.5.1 71592 d.94.2.1 71593 1su4A 994 3.11e+01 1sqsA 242 3.15e+01 1atiA 505 3.24e+01 1atiA c.51.1.1 33196 d.104.1.1 40745 1hbnC 248 3.25e+01 1mroC d.58.31.1 60902 1m6sA 347 3.31e+01 c.67.1.1 78701 1ecsA 126 3.33e+01 1ecsA d.32.1.2 59407 1rwzA 245 3.34e+01 1gdoA 240 3.40e+01 1gdoA d.153.1.1 41804 1p7tA 731 3.46e+01 1qmhA 347 3.49e+01 1qmhA c.47.2.1 33082 d.68.2.1 39568 1nscA 390 3.70e+01 2qwc b.68.1.1 27591