# List of top-scoring protein chains for t04-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1d8hA 311 1.65e-02 1d8iA d.63.1.1 39544 1uc8A 280 7.71e-02 1p8kZ 254 1.18e-01 1fa8A 135 1.20e-01 1qipA d.32.1.1 38486 1ecsA 126 1.25e-01 1ecsA d.32.1.2 59407 1f9zA 135 1.40e-01 1qipA d.32.1.1 38484 1j97A 211 1.61e-01 1f5sA c.108.1.4 62753 1l7mA 211 1.69e-01 c.108.1.4 73664 1ukuA 102 2.51e-01 1v8cA 168 2.66e-01 1oi7A 288 3.52e-01 c.2.1.8 87049 c.23.4.1 87050 1cjbA 231 6.21e-01 1qk3A c.61.1.1 34079 1g8lA 411 6.74e-01 1g8lA b.85.6.1 60365 b.103.1.1 60366 c.57.1.2 60367 1us5A 314 8.24e-01 1f52A 468 8.58e-01 1lgr d.15.9.1 37839 d.128.1.1 41169 1ftrA 296 9.77e-01 1ftrA d.58.33.1 39485 d.58.33.1 39486 1vk6A 269 1.05e+00 1i06A 180 1.43e+00 1mup b.60.1.1 27131 1i05A 180 1.45e+00 1mup b.60.1.1 27130 1n0uA 842 1.61e+00 b.43.3.1 79757 c.37.1.8 79758 d.14.1.1 79759 d.58.11.1 79760 d.58.11.1 79761 1jv4A 162 1.65e+00 b.60.1.1 67343 1nnhA 294 1.83e+00 1kr4A 125 2.19e+00 d.58.5.2 72889 1qy1A 174 2.42e+00 2polA 366 3.28e+00 2polA d.131.1.1 41356 d.131.1.1 41357 d.131.1.1 41358 1mup 166 3.63e+00 1mup b.60.1.1 27133 1nd4A 264 3.80e+00 1vkfA 188 3.80e+00 1hn2A 159 3.80e+00 b.60.1.1 65890 1gt1A 159 3.83e+00 1cjxA 357 4.58e+00 1cjxA d.32.1.3 38516 d.32.1.3 38517 1jksA 294 4.67e+00 d.144.1.7 71710 1su4A 994 5.07e+00 1o4uA 285 5.61e+00 c.1.17.1 86624 d.41.2.1 86625 1n7oA 721 5.69e+00 a.102.3.2 80259 b.24.1.1 80260 b.30.5.2 80261 1atiA 505 5.70e+00 1atiA c.51.1.1 33196 d.104.1.1 40745 1mgtA 174 5.89e+00 1mgtA a.4.2.1 16078 c.55.7.1 33753 1b6rA 355 6.08e+00 1b6rA b.84.2.1 28241 c.30.1.1 31648 d.142.1.2 41493 1jyhA 157 6.35e+00 d.60.1.3 71956 1odkA 235 6.44e+00 c.56.2.1 86863 1eulA 994 7.10e+00 1eulA b.82.7.1 75829 c.108.1.7 75830 d.220.1.1 75831 f.33.1.1 75832 1r9cA 139 7.20e+00 1l0wA 580 8.09e+00 b.40.4.1 73426 d.74.4.1 73427 d.104.1.1 73428 1mmiA 366 8.15e+00 1cb0A 283 8.19e+00 1cb0A c.56.2.1 33790 1a88A 275 8.45e+00 1brt c.69.1.12 34707 1hl9A 449 8.55e+00 1lqpA 135 8.65e+00 d.32.1.2 78151 1nkiA 135 8.65e+00 1c4kA 730 8.67e+00 1ordA c.23.1.4 31273 c.67.1.5 34502 d.125.1.1 41123 1q8yA 373 8.80e+00 1anf 370 8.89e+00 4mbp c.94.1.1 35776 1gx3A 284 9.69e+00 d.3.1.5 70678 1jg8A 347 1.01e+01 1jg8A c.67.1.1 62946 1luzA 88 1.04e+01 b.40.4.5 74271 1obpA 159 1.04e+01 1obpA b.60.1.1 27092 1bzyA 217 1.04e+01 1qk3A c.61.1.1 34071 1m6sA 347 1.06e+01 c.67.1.1 78701 1jg5A 83 1.07e+01 d.205.1.1 66666 1oj4A 283 1.11e+01 1c1yB 77 1.13e+01 1c1yB d.15.1.5 37618 1g6sA 427 1.15e+01 1eps d.68.2.2 39584 1qyaA 307 1.21e+01 1lx7A 253 1.22e+01 c.56.2.1 74329 1nscA 390 1.25e+01 2qwc b.68.1.1 27591 1rxyA 253 1.27e+01 1pytA 94 1.29e+01 1pytA d.58.3.1 39064 1eguA 731 1.33e+01 1eguA a.102.3.2 18850 b.24.1.1 23899 b.30.5.2 24423 1pqnA 127 1.33e+01 1k8kB 394 1.34e+01 c.55.1.1 68307 1lm6A 215 1.39e+01 d.167.1.1 84628 1l6rA 227 1.41e+01 c.108.1.10 77768 1a8s 273 1.42e+01 1brt c.69.1.12 34710 1dpgA 485 1.46e+01 1dpgA c.2.1.3 30074 d.81.1.5 39989 1dkuA 317 1.49e+01 1dkuA c.61.1.2 34118 c.61.1.2 34119 1fuiA 591 1.50e+01 1fuiA b.43.2.1 25674 c.85.1.1 35444 1ksiA 642 1.50e+01 1ksiB b.30.2.1 24408 d.17.2.1 38043 d.17.2.1 38044 1o5uA 101 1.53e+01 1dzkA 157 1.53e+01 1obpA b.60.1.1 27096 1kllA 130 1.56e+01 d.32.1.2 72720 1sdjA 310 1.59e+01 1itwA 741 1.61e+01 c.77.1.2 76793 1nrlA 316 1.62e+01 1p9oA 313 1.64e+01 1jxpA 186 1.64e+01 1jxpA b.47.1.3 26402 1uzcA 71 1.65e+01 1qgvA 142 1.67e+01 1qgvA c.47.1.8 33056 1gt91 357 1.67e+01 1d6jA 211 1.69e+01 1d6jA c.37.1.4 31940 1dy9A 187 1.72e+01 1jxpA b.47.1.3 26400 1omp 370 1.72e+01 4mbp c.94.1.1 35778 1ixcA 294 1.74e+01 a.4.5.37 83764 c.94.1.1 83765 1jfuA 186 1.86e+01 c.47.1.10 62940 1djtA 64 1.88e+01 1aho g.3.7.1 44132 1i31A 314 1.90e+01 1bw8A b.2.7.1 22481 1ve9A 347 1.91e+01 1han 297 1.94e+01 1han d.32.1.3 38506 d.32.1.3 38507 1k7jA 206 2.02e+01 d.115.1.1 72103 1om0A 274 2.04e+01 c.1.8.5 87058 1p7tA 731 2.04e+01 1gdoA 240 2.06e+01 1gdoA d.153.1.1 41804 1in4A 334 2.10e+01 1hqcA a.4.5.11 62597 c.37.1.20 62598 1lzlA 323 2.11e+01 c.69.1.2 78306 1in6A 334 2.14e+01 1hqcA a.4.5.11 62601 c.37.1.20 62602 1jkeA 145 2.15e+01 c.110.1.1 66791 1p5dX 463 2.17e+01 1jbeA 128 2.18e+01 3chy c.23.1.1 62845 1czyA 168 2.28e+01 1d0aB b.8.1.1 23220 h.1.2.1 45427 1o0uA 429 2.31e+01 c.118.1.1 80743 1nmoA 247 2.31e+01 1rlhA 173 2.34e+01 4mbp 370 2.37e+01 4mbp c.94.1.1 35777 1r5jA 337 2.37e+01 1jc4A 148 2.37e+01 1jc4A d.32.1.4 62863 1k2yX 463 2.39e+01 c.84.1.1 68063 c.84.1.1 68064 c.84.1.1 68065 d.129.2.1 68066 1dp3A 55 2.40e+01 1dp3A a.55.1.2 59128 1uch 230 2.47e+01 1uch d.3.1.6 37129 1ooyA 481 2.52e+01 1rwzA 245 2.53e+01 1nx8A 273 2.57e+01 b.82.2.8 86374 1jh6A 189 2.58e+01 d.61.1.1 66707 3chy 128 2.59e+01 3chy c.23.1.1 31038 1qmhA 347 2.61e+01 1qmhA c.47.2.1 33082 d.68.2.1 39568 1howA 373 2.65e+01 1hcl d.144.1.7 41679 1oz9A 150 2.68e+01 1s9aA 257 2.71e+01 1ltoA 245 2.72e+01 b.47.1.2 84707 1dzlA 505 2.76e+01 1dzlA b.121.6.1 23586 1f4lA 551 2.93e+01 1qqtA a.27.1.1 59648 c.26.1.1 59649 g.41.1.1 59650 1mplA 349 2.96e+01 e.3.1.1 79387 1g5hA 454 3.01e+01 1g5hA c.51.1.1 60270 d.104.1.1 60271 1k07A 263 3.01e+01 d.157.1.1 77218 1ne9A 335 3.05e+01 1d2fA 390 3.07e+01 1d2fA c.67.1.3 34411 1nw1A 429 3.09e+01 d.144.1.8 86286 1sjyA 159 3.11e+01 1sgvA 316 3.13e+01 1drw 273 3.15e+01 1drw c.2.1.3 30057 d.81.1.3 39972 1o6zA 303 3.21e+01 c.2.1.5 81107 d.162.1.1 81108 1agi 125 3.23e+01 7rsa d.5.1.1 37303 1uhgA 385 3.24e+01 e.1.1.1 88491 1sqsA 242 3.25e+01 1d4xA 375 3.25e+01 1yagA c.55.1.1 59107 c.55.1.1 59108 1lkdA 297 3.34e+01 d.32.1.3 78059 d.32.1.3 78060 1nh1A 330 3.38e+01 1k0rA 366 3.46e+01 b.40.4.5 67961 d.52.3.1 67962 d.52.3.1 67963 d.202.1.1 67964 1mb3A 124 3.48e+01 c.23.1.1 78907 1iq4A 179 3.52e+01 1iq4A d.77.1.1 62641 1exqA 154 3.54e+01 1b9dA c.55.3.2 33646 1eg7A 557 3.56e+01 1eg7A c.37.1.10 32241 1qcxA 359 3.58e+01 1qcxA b.80.1.2 28028 1r72A 211 3.59e+01 1r6lA 239 3.63e+01 1hv9A 456 3.64e+01 1fwyA b.81.1.4 28060 c.68.1.5 34518 1kao 167 3.66e+01 1ctqA c.37.1.8 32014 1jj2B 337 3.68e+01 1ffkB b.43.3.2 63086 1o58A 303 3.70e+01 1aa8A 347 3.70e+01 1an9A c.4.1.2 30619 d.16.1.3 37906 1aisA 182 3.74e+01 1ytbA d.129.1.1 41288 d.129.1.1 41289 1p8xA 344 3.75e+01 1k8wA 327 3.89e+01 b.122.1.1 83094 d.58.35.2 68317 d.58.35.2 83095