# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1d8hA 311 5.18e-01 1d8iA d.63.1.1 39544 1lb6A 160 7.54e-01 b.8.1.1 73798 1ecrA 309 2.10e+00 1ecrA e.2.1.1 42678 1k4nA 192 3.31e+00 d.32.1.5 72059 1g2aA 168 3.95e+00 d.167.1.1 65109 1ld8A 382 4.70e+00 a.118.6.1 73838 1nzjA 298 5.12e+00 1uch 230 6.36e+00 1uch d.3.1.6 37129 1d8dA 377 6.55e+00 1ft1A a.118.6.1 19185 1l1zA 274 7.60e+00 a.156.1.2 75911 b.113.1.1 75912 g.39.1.8 75913 1dk8A 147 8.09e+00 1agrE a.91.1.1 18548 1k3eA 156 8.37e+00 d.198.1.1 68103 1bs4A 168 8.49e+00 1bs4A d.167.1.1 42287 1nnhA 294 8.55e+00 1n2fA 142 8.91e+00 d.227.1.1 79853 1lngA 87 8.93e+00 d.201.1.1 74045 1sb0A 87 8.96e+00 1v54E 109 9.19e+00 1phk 298 9.39e+00 1cdkA d.144.1.7 41635 1r2zA 274 9.40e+00 1fa8A 135 9.98e+00 1qipA d.32.1.1 38486 1dzkA 157 1.01e+01 1obpA b.60.1.1 27096 1d4fA 431 1.04e+01 1b3rA c.2.1.4 30110 c.23.12.3 31370 1bgp 309 1.04e+01 1bgp a.93.1.1 18690 2occE 109 1.06e+01 2occE a.118.11.1 19224 1lid 131 1.20e+01 1hmt b.60.1.2 27184 1nxuA 333 1.23e+01 c.122.1.1 86389 1q0sA 259 1.24e+01 1ji1A 637 1.30e+01 b.1.18.2 71666 b.71.1.1 71667 c.1.8.1 71668 1d2kA 392 1.32e+01 1d2kA c.1.8.5 29008 d.26.3.1 38442 1fezA 256 1.37e+01 1fezA c.108.1.3 43343 1pv9A 348 1.65e+01 1qgvA 142 1.70e+01 1qgvA c.47.1.8 33056 1dv1A 449 1.76e+01 1bncA b.84.2.1 28234 c.30.1.1 31641 d.142.1.2 41486 1j7lA 264 1.76e+01 d.144.1.6 62697 1auvA 311 1.78e+01 1auvA c.30.1.5 31723 d.142.1.3 41558 1jb7B 260 1.81e+01 1otcB b.40.4.3 62839 1mkmA 249 1.82e+01 a.4.5.33 79242 d.110.2.2 79243 1kcqA 104 1.96e+01 d.109.1.1 68449 1jfuA 186 1.99e+01 c.47.1.10 62940 1bgf 124 2.00e+01 1bgf a.90.1.1 18537 2sas 185 2.04e+01 2sas a.39.1.5 17258 1nc7A 138 2.14e+01 b.123.1.1 85549 1vcc 77 2.22e+01 1vcc d.121.1.1 41092 1nh2D 121 2.23e+01 1f9zA 135 2.32e+01 1qipA d.32.1.1 38484 1dosA 358 2.36e+01 1dosA c.1.10.2 29175 1oo0A 147 2.37e+01 d.232.1.1 87182 1dtdA 303 2.52e+01 1aye c.56.5.1 33823 1rqlA 267 2.53e+01 1jalA 363 2.53e+01 c.37.1.8 84138 d.15.10.2 84139 1od5A 492 2.64e+01 b.82.1.2 86832 b.82.1.2 86833 1li4A 432 2.89e+01 c.2.1.4 84616 c.23.12.3 84617 2tysA 268 2.92e+01 2tysA c.1.2.4 28572 1avoB 140 2.97e+01 1avoB 1nq6A 302 3.02e+01 1i1dA 161 3.07e+01 1i21A d.108.1.1 61526 1o57A 291 3.13e+01 1tph1 247 3.23e+01 1amk 1danU 121 3.32e+01 1boy b.1.2.1 21954 1fc1A 224 3.40e+01 1igtB b.1.1.2 21520 b.1.1.2 21521 1o4sA 389 3.40e+01 c.67.1.1 86620 1jj2B 337 3.41e+01 1ffkB b.43.3.2 63086 1lg7A 182 3.48e+01 d.213.1.1 73888 1jv4A 162 3.53e+01 b.60.1.1 67343 1nb5I 98 3.55e+01 d.17.1.2 80381 1i12A 160 3.58e+01 1i21A d.108.1.1 61515 1oxnA 140 3.72e+01 1f44A 324 3.73e+01 a.60.9.1 64982 d.163.1.1 64983 1v8cA 168 3.78e+01 1jipA 403 3.85e+01 a.104.1.1 66748 1k2yX 463 3.95e+01 c.84.1.1 68063 c.84.1.1 68064 c.84.1.1 68065 d.129.2.1 68066