;  SAM: prettyalign v3.5 (May 1, 2004) compiled 05/13/04_16:24:56
;  (c) 1992-2001 Regents of the University of California, Santa Cruz
;
;          Sequence Alignment and Modeling Software System
;         http://www.cse.ucsc.edu/research/compbio/sam.html
;
; ----------------- Citations (SAM, SAM-T2K, HMMs) --------------------
; R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
;  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
; K. Karplus, et al., What is the value added by human intervention in protein
;  structure prediction, Proteins: Stucture, Function, Genetics 45(S5):86--91, 2001.
; A. Krogh et al., Hidden Markov models in computational biology:
;  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
; ---------------------------------------------------------------------
                                                                  10  
                                                                   |  
T0197 ahhhhhhgseveikfkikledflhtlntfnpefvryeeqedvyfevprpkll------------
1d8hA ....................................................HMYRNVPIWAQK


            20        30        40        50        60        70      
             |         |         |         |         |         |      
T0197 ----------------------------------------------------------------
1d8hA WKPTIKALQSINVKDLKIDPSFLNIIPDDDLTKSVQDWVYATIYSIAPELRSFIELEMKFGVII


        80        90       100       110       120       130       140
         |         |         |         |         |         |         |
T0197 ----------------------------------------------------------------
1d8hA DAKGPDRVNPPVSSQCVFTELDAHLTPNIDASLFKELSKYIRGISEVTENTGKFSIIESQTRDS


                  150       160       170       180       190       20
                    |         |         |         |         |         
T0197 -----.....------------------------------------------------------
1d8hA VYRVGlstqrPRFLRMSTDIKTGRVGQFIEKRHVAQLLLYSPKDSYDVKISLNLELPVPDNDPP


      0       210       220       230               240       250     
      |         |         |         |                 |         |     
T0197 ---------------RIRGVHNLKKYYLTFKEILDEn.......NEEFYEVEFEIGDFE-----
1d8hA EKYKSQSPISERTKDRVSYIHNDSCTRIDITKVENHnqnsksrqSETTHEVELEINTPALLNAF


        260       270       280                                       
          |         |         |                                       
T0197 ---------------------------------kavevfkrlgfkiqatikkkrwvyklngvtl
1d8hA DNITNDSKEYASLIRTFLNNGTIIRRKLSSLSYeifegskkvm.....................


                                                                 
                                                                 
T0197 evnrvegigdfvdievisdspeeakekiwevakmlglkeedveprlylelinelsgrss
1d8hA ...........................................................