// put any constraints here, such as helix constraints, strand constraints,
//	ssbond, hbond, or just arbitrary pairs of atoms.

HelixConstraint 	S9	K16	0.9

StrandConstraint	K48	E56	0.5
StrandConstraint	K65	G68	1.1
StrandConstraint	G74	E79	0.7
StrandConstraint	I94	I98	1.0


// Try packing the initial helix against the beta unit:
Constraint L15.CD2	G95.CA	0	3.6	8	0.5

// Maybe pick up some constraints from the mutual-info predictions:
// These are not consistent, so should only be used with bonus_constraints
// cost function.

// From t2k-thin30
# Two of these three are reasonably consistent---I84 and I89 are on opposite
# sides of the groove that I think the initial helix packs into.
Constraint R17.CB E112.CB -10. 7.0 12.0 0.116958

Constraint R17.CB K84.CB -10. 7.0 12.0 0.110032
Constraint E19.CB I89.CB -10. 7.0 12.0 0.107884

// From t2k-thin62
# These form three distinct patches on the surface
Constraint G8.CA E40.CB -10. 7.0 12.0  0.11769
Constraint G8.CA I52.CB -10. 7.0 12.0  0.11634

Constraint G8.CA S70.CB -10. 7.0 12.0 0.120141

Constraint G8.CA S97.CB -10. 7.0 12.0 0.106387


# These form a surface patch.
Constraint H7.CB E40.CB -10. 7.0 12.0 0.114363
Constraint H7.CB E56.CB -10. 7.0 12.0 0.123808
Constraint H7.CB R93.CB -10. 7.0 12.0 0.121084

# but this is separate
Constraint H7.CB E79.CB -10. 7.0 12.0 0.111146