# List of top-scoring protein chains for T0196.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1b23P 405 2.86e-25 1efcA b.43.3.1 25689 b.44.1.1 25729 c.37.1.8 32124 1eft 405 2.86e-25 1efcA b.43.3.1 25688 b.44.1.1 25728 c.37.1.8 32123 1exmA 405 3.75e-25 1efcA b.43.3.1 25696 b.44.1.1 25736 c.37.1.8 32131 1aipA 405 4.67e-25 1efcA b.43.3.1 25697 b.44.1.1 25737 c.37.1.8 32132 1jnyA 435 8.93e-25 b.43.3.1 66982 b.44.1.1 66983 c.37.1.8 66984 1d8tA 393 3.27e-24 1efcA b.43.3.1 25686 b.44.1.1 25726 c.37.1.8 32119 1efcA 393 3.27e-24 1efcA b.43.3.1 25680 b.44.1.1 25720 c.37.1.8 32113 1dg1G 394 3.27e-24 1efcA b.43.3.1 25684 b.44.1.1 25724 c.37.1.8 32117 1efuA 385 3.27e-24 1efcA b.43.3.1 25682 b.44.1.1 25722 c.37.1.8 32115 1efm 379 3.28e-24 1efcA c.37.1.8 64732 1etu 379 3.50e-24 1efcA c.37.1.8 64737 1mj1A 405 2.28e-23 i.1.1.1 79175 1f60A 458 3.90e-23 1efcA b.43.3.1 25705 b.44.1.1 25745 c.37.1.8 32140 1d2eA 397 4.82e-22 1efcA b.43.3.1 25701 b.44.1.1 25741 c.37.1.8 32136 1r5bA 467 1.11e-11 1kk3A 410 4.43e-09 b.43.3.1 72640 b.44.1.1 72641 c.37.1.8 72642 1kk1A 410 6.30e-09 b.43.3.1 72634 b.44.1.1 72635 c.37.1.8 72636 1s0uA 408 2.73e-07 1d1nA 99 1.68e-03 1d1nA b.43.3.1 25718 1n0uA 842 3.51e-03 b.43.3.1 79757 c.37.1.8 79758 d.14.1.1 79759 d.58.11.1 79760 d.58.11.1 79761 1g7sA 594 4.62e-03 1g7rA b.43.3.1 25712 b.43.3.1 25713 c.20.1.1 31032 c.37.1.8 32147 1bkwA 394 3.55e-01 1pbe c.3.1.2 30343 d.16.1.2 37874 1pbf 394 4.10e-01 1pbe c.3.1.2 30349 d.16.1.2 37880 1pbe 394 4.11e-01 1pbe c.3.1.2 30338 d.16.1.2 37869 1cc6A 394 4.11e-01 1pbe c.3.1.2 30344 d.16.1.2 37875 1pbd 394 4.11e-01 1pbe c.3.1.2 30342 d.16.1.2 37873 1bgj 394 4.12e-01 1pbe c.3.1.2 30352 d.16.1.2 37883 1bgn 394 4.17e-01 1pbe c.3.1.2 30339 d.16.1.2 37870 1cc4A 394 4.20e-01 1pbe c.3.1.2 30340 d.16.1.2 37871 1cj2A 391 4.28e-01 1pbe c.3.1.2 30351 d.16.1.2 37882 1k0iA 394 4.36e-01 c.3.1.2 67942 d.16.1.2 67943 1dob 394 4.40e-01 1pbe c.3.1.2 30362 d.16.1.2 37893 1pxb 394 4.41e-01 1pbe c.3.1.2 30367 d.16.1.2 37898 1iut 394 4.42e-01 1pbe c.3.1.2 30355 d.16.1.2 37886 1pxc 394 4.42e-01 1pbe c.3.1.2 30361 d.16.1.2 37892 1cj4A 392 4.43e-01 1pbe c.3.1.2 30345 d.16.1.2 37876 1pxa 394 4.44e-01 1pbe c.3.1.2 30366 d.16.1.2 37897 1e25A 282 6.32e-01 1e25A e.3.1.1 42731 1cj3A 392 6.85e-01 1pbe c.3.1.2 30347 d.16.1.2 37878 1bf3 394 7.62e-01 1pbe c.3.1.2 30346 d.16.1.2 37877 1po0A 751 9.47e-01 1kmoA 774 9.58e-01 f.4.3.3 72753 1irp 153 1.00e+00 1irp b.42.1.2 25559 1ilr1 152 1.08e+00 1irp 1g3p 217 1.40e+00 1g3p b.37.1.1 24788 b.37.1.1 24789 2g3pA 225 1.56e+00 1g3p b.37.1.1 24791 b.37.1.1 24792 1dbrA 231 2.12e+00 1qk3A c.61.1.1 34041 1fsgA 233 2.12e+00 1qk3A c.61.1.1 34029 1sgzA 389 2.24e+00 1fknA 391 2.26e+00 1fknA b.50.1.2 26879 1qk5A 233 2.35e+00 1qk3A c.61.1.1 34035 1a04A 215 2.44e+00 1a04A a.4.6.2 16234 c.23.1.1 31089 1e32A 458 2.80e+00 1e32A b.52.2.3 59183 c.37.1.20 59184 d.31.1.1 59185 1uzbA 516 3.25e+00 1oen 540 4.40e+00 1ayl c.91.1.1 64750 c.109.1.1 64751 1kv3A 687 5.11e+00 b.1.18.9 73027 b.1.5.1 73028 b.1.5.1 73029 d.3.1.4 73030 1dst 228 5.36e+00 1a7s b.47.1.2 26318 1ubkL 534 7.64e+00 e.18.1.1 88422 1h2rL 534 7.80e+00 1h2rL e.18.1.1 43298 1jp4A 308 8.99e+00 1jp4A e.7.1.1 63223 1m7jA 484 9.22e+00 b.92.1.6 78732 b.92.1.6 78733 c.1.9.11 78734 1ojoA 731 9.32e+00 1h2aL 567 9.34e+00 1h2rL e.18.1.1 43299 1r7rA 816 9.48e+00 1oz4A 806 9.49e+00 1n7qA 721 9.72e+00 a.102.3.2 80265 b.24.1.1 80266 b.30.5.2 80267 1ojmA 729 9.73e+00 1eguA 731 9.74e+00 1eguA a.102.3.2 18850 b.24.1.1 23899 b.30.5.2 24423 1lxkA 721 9.76e+00 a.102.3.2 74331 b.24.1.1 74332 b.30.5.2 74333 1ojnA 731 9.80e+00 1n7nA 721 9.84e+00 a.102.3.2 80256 b.24.1.1 80257 b.30.5.2 80258 1rjqA 496 1.05e+01 1v4yA 496 1.09e+01 1rk6A 496 1.09e+01 1lo5D 233 1.23e+01 b.40.2.2 78120 d.15.6.1 78121 1esfA 233 1.24e+01 3seb b.40.2.2 25146 d.15.6.1 37735 1htiA 248 1.29e+01 1amk c.1.1.1 28455 1nriA 306 1.33e+01 c.80.1.3 86123 1bio 228 1.34e+01 5ptp b.47.1.2 26314 1fdpA 235 1.35e+01 5ptp b.47.1.2 26322 1go3E 187 1.36e+01 b.40.4.5 83054 d.230.1.1 83055 1r0vA 305 1.44e+01 1j3gA 187 1.49e+01 d.118.1.1 77075 1i4gA 233 1.53e+01 3seb b.40.2.2 25148 d.15.6.1 37737 1h1dA 221 1.54e+01 c.66.1.1 83452 1rgoA 70 1.55e+01 1r2rA 248 1.61e+01 1dd5A 185 1.62e+01 1dd5A d.67.3.1 39564 1nw8A 319 1.64e+01 c.66.1.11 86292 1eg2A 319 1.65e+01 1eg2A c.66.1.11 34249 1am1 213 1.76e+01 1yer d.122.1.1 41095 1amw 214 1.77e+01 1yer d.122.1.1 41093 1ah6 220 1.79e+01 1yer d.122.1.1 41094 1bgq 225 1.80e+01 1yer d.122.1.1 41098 1npuA 117 1.80e+01 1a4h 230 1.81e+01 1yer d.122.1.1 41099 1uflA 116 1.85e+01 1sssA 205 1.87e+01 1avmA a.2.11.1 15738 d.44.1.1 38735 1fq3A 227 1.96e+01 5ptp b.47.1.2 26376 1iauA 227 1.98e+01 5ptp b.47.1.2 62124 1dyqA 234 1.99e+01 3seb b.40.2.2 59140 d.15.6.1 59141 2eifA 136 2.01e+01 1bkb b.34.5.2 24607 b.40.4.5 25339 1eif 135 2.05e+01 1bkb b.34.5.2 24608 b.40.4.5 25340 1m3qA 317 2.06e+01 1n3cA 317 2.06e+01 a.96.1.3 85293 d.129.1.2 85294 1ebmA 317 2.07e+01 1ebmA a.96.1.3 18751 d.129.1.2 41300 1nngA 153 2.09e+01 1nrfA 262 2.09e+01 1n3aA 317 2.09e+01 a.96.1.3 85291 d.129.1.2 85292 1qcxA 359 2.10e+01 1qcxA b.80.1.2 28028 1tbn 82 2.19e+01 1ptq g.49.1.1 45354 1jkgA 140 2.24e+01 d.17.4.2 66795 1fn7A 317 2.24e+01 1ebmA a.96.1.3 59892 d.129.1.2 59893 1lwyA 324 2.26e+01 a.96.1.3 78285 d.129.1.2 78286 1mbs 153 2.28e+01 1a6m a.1.1.2 15156 1bkb 136 2.29e+01 1bkb b.34.5.2 24609 b.40.4.5 25341 1is8A 230 2.33e+01 d.96.1.1 66321 1ko9A 345 2.36e+01 a.96.1.3 68717 d.129.1.2 68718 1g6aA 271 2.40e+01 1btl e.3.1.1 42704 1g68A 271 2.44e+01 1btl e.3.1.1 42705 1os1A 540 2.46e+01 1ayl 541 2.47e+01 1ayl c.91.1.1 64718 c.109.1.1 64719 1cb8A 678 2.48e+01 1cb8A a.102.3.2 18849 b.24.1.1 23898 b.30.5.2 24422 1oaa 259 2.49e+01 1oaa c.2.1.2 29829 1sep 261 2.50e+01 1oaa c.2.1.2 29830 1hmuA 700 2.53e+01 1cb8A a.102.3.2 61089 b.24.1.1 61090 b.30.5.2 61091 1xch 153 2.58e+01 1a6m a.1.1.2 15194 1frd 98 2.62e+01 1awd d.15.4.1 37648 1an7A 136 2.62e+01 1seiA d.140.1.1 41465 1gpqA 135 2.62e+01 d.233.1.1 83295 1hrm 153 2.65e+01 1a6m a.1.1.2 15193 1gjnA 153 2.66e+01 a.1.1.2 70191 1r5vB 185 2.67e+01 1k0hA 117 2.67e+01 b.106.1.2 71975 1fjgH 138 2.68e+01 1seiA d.140.1.1 41468 1yma 153 2.71e+01 1a6m a.1.1.2 15202 1o1xA 155 2.71e+01 c.121.1.1 86553 1nxcA 478 2.76e+01 1bje 153 2.77e+01 1a6m a.1.1.2 15197 1rse 153 2.78e+01 1a6m a.1.1.2 15196 1p85I 123 2.92e+01 i.1.1.1 87878 1kt2B 213 2.95e+01 b.1.1.2 72953 d.19.1.1 72954 1iebB 227 3.01e+01 1iakB b.1.1.2 21636 d.19.1.1 38210 1nekA 588 3.01e+01 a.7.3.1 80426 c.3.1.4 80427 d.168.1.1 80428 1nz2A 153 3.01e+01 a.1.1.2 86437 1i94H 138 3.05e+01 1seiA d.140.1.1 61999 1ky9A 448 3.07e+01 b.36.1.4 73198 b.47.1.1 73199 1a6aB 187 3.09e+01 1iakB b.1.1.2 21616 d.19.1.1 38190 1d1tA 373 3.17e+01 2ohxA b.35.1.2 24719 c.2.1.1 29735 1n7eA 97 3.17e+01 1n7oA 721 3.22e+01 a.102.3.2 80259 b.24.1.1 80260 b.30.5.2 80261 1fi1A 707 3.22e+01 1by5A f.4.3.3 59844 1qfgA 725 3.23e+01 1by5A f.4.3.3 43803 1n7rA 721 3.23e+01 a.102.3.2 80268 b.24.1.1 80269 b.30.5.2 80270 1fcpA 705 3.25e+01 1by5A f.4.3.3 43805 2fcpA 723 3.25e+01 1by5A f.4.3.3 43802 1pmy 123 3.27e+01 1bqk b.6.1.1 22888 1nz3A 153 3.27e+01 a.1.1.2 86438 1n7pA 721 3.28e+01 a.102.3.2 80262 b.24.1.1 80263 b.30.5.2 80264 1by5A 714 3.41e+01 1by5A f.4.3.3 43800 1q1oA 98 3.49e+01 1jv2A 957 3.49e+01 b.1.15.1 67334 b.1.15.1 67335 b.1.15.1 67336 b.69.8.1 67337 1phm 310 3.54e+01 1phm b.121.1.2 59015 b.121.1.2 59016 1sdwA 314 3.57e+01 1f1xA 322 3.61e+01 d.32.1.3 83208 d.32.1.3 83209 1otsC 222 3.61e+01 b.1.1.1 87417 b.1.1.2 87418 1mnh 153 3.67e+01 1a6m a.1.1.2 15187 1pqvG 171 3.73e+01 1jvwA 167 3.80e+01 d.26.1.1 71907 1q0cA 365 3.82e+01 d.32.1.3 88343 d.32.1.3 88344 1d1sA 373 3.82e+01 2ohxA b.35.1.2 24727 c.2.1.1 29743 1jehA 478 3.87e+01 1lvl c.3.1.5 62912 c.3.1.5 62913 d.87.1.1 62914 1oa2A 218 3.92e+01 b.29.1.11 86721 1mwcA 153 3.92e+01 1a6m a.1.1.2 15157 1olqA 218 3.92e+01 1ktdB 215 3.93e+01 b.1.1.2 72966 d.19.1.1 72967 1h8vA 218 3.94e+01 2nlrA b.29.1.11 60795 1d5mB 192 3.96e+01 1iakB b.1.1.2 21618 d.19.1.1 38192 1o58A 303 3.97e+01