# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1jnyA 435 1.32e-27 b.43.3.1 66982 b.44.1.1 66983 c.37.1.8 66984 1aipE 405 2.48e-27 1efcA b.43.3.1 25699 b.44.1.1 25739 c.37.1.8 32134 1efcA 393 4.49e-27 1efcA b.43.3.1 25680 b.44.1.1 25720 c.37.1.8 32113 1exmA 405 2.03e-26 1efcA b.43.3.1 25696 b.44.1.1 25736 c.37.1.8 32131 1ha3A 405 2.50e-26 1efcA b.43.3.1 60869 b.44.1.1 60870 c.37.1.8 60871 1f60A 458 1.39e-24 1efcA b.43.3.1 25705 b.44.1.1 25745 c.37.1.8 32140 1d2eA 397 6.55e-24 1efcA b.43.3.1 25701 b.44.1.1 25741 c.37.1.8 32136 1s0uA 408 2.58e-09 1kk1A 410 1.63e-08 b.43.3.1 72634 b.44.1.1 72635 c.37.1.8 72636 1g7tA 594 4.20e-05 1g7rA b.43.3.1 25714 b.43.3.1 25715 c.20.1.1 31033 c.37.1.8 32148 1d1nA 99 6.15e-05 1d1nA b.43.3.1 25718 1g7sA 594 1.12e-04 1g7rA b.43.3.1 25712 b.43.3.1 25713 c.20.1.1 31032 c.37.1.8 32147 1g7rA 594 1.38e-04 1g7rA b.43.3.1 25716 b.43.3.1 25717 c.20.1.1 31034 c.37.1.8 32149 1n0uA 842 2.68e-01 b.43.3.1 79757 c.37.1.8 79758 d.14.1.1 79759 d.58.11.1 79760 d.58.11.1 79761 1irp 153 4.34e-01 1irp b.42.1.2 25559 1n7fA 97 1.88e+00 1mq7A 154 2.01e+00 b.85.4.1 79404 1vjnA 220 2.40e+00 1go3E 187 2.45e+00 b.40.4.5 83054 d.230.1.1 83055 1sixA 174 2.74e+00 1n7eA 97 3.44e+00 1csh 435 4.94e+00 1csh a.103.1.1 18880 1unkA 87 5.11e+00 1cei a.28.2.1 16935 1csc 433 5.44e+00 1csh a.103.1.1 18886 1kqfC 217 5.48e+00 f.21.1.1 72874 1k8rB 110 5.62e+00 d.15.1.5 72180 1cei 94 5.64e+00 1cei a.28.2.1 16939 1fw9A 164 6.41e+00 1fw9A d.190.1.1 60059 6cts 433 6.78e+00 1csh a.103.1.1 18891 1kmoA 774 7.37e+00 f.4.3.3 72753 1etu 394 7.89e+00 1efcA c.37.1.8 64737 1pmy 123 7.91e+00 1bqk b.6.1.1 22888 1po0A 751 9.15e+00 1amz 435 9.61e+00 1csh a.103.1.1 18884 1kcfA 258 1.01e+01 a.140.2.1 68434 c.55.3.7 68435 1gpqA 135 1.06e+01 d.233.1.1 83295 2eifA 136 1.22e+01 1bkb b.34.5.2 24607 b.40.4.5 25339 1q1oA 98 1.31e+01 2rhe 114 1.47e+01 8fabA b.1.1.1 20523 1jhfA 202 1.59e+01 a.4.5.2 63057 b.87.1.1 63058 1jj2K 164 1.62e+01 1ffkJ c.12.1.1 63096 1an7A 136 1.81e+01 1seiA d.140.1.1 41465 1k0hA 117 1.89e+01 b.106.1.2 71975 1bb9 115 1.98e+01 1bb9 b.34.2.1 24554 8prn 289 1.98e+01 3prn f.4.3.1 43767 1ilr1 152 2.15e+01 1irp 1ry6A 360 2.18e+01 1g3p 217 2.23e+01 1g3p b.37.1.1 24788 b.37.1.1 24789 1frd 98 2.25e+01 1awd d.15.4.1 37648 1orrA 347 2.30e+01 1s5uA 138 2.34e+01 1sro 76 2.35e+01 1sro b.40.4.5 25327 1kwaB 88 2.46e+01 1kwaA b.36.1.1 24773 1by5A 714 2.47e+01 1by5A f.4.3.3 43800 1bkb 136 2.67e+01 1bkb b.34.5.2 24609 b.40.4.5 25341 1mkyA 439 2.71e+01 c.37.1.8 79250 c.37.1.8 79251 d.52.5.1 79252 1i7qA 519 2.75e+01 1qdlA d.161.1.1 61901 1rifA 282 2.87e+01 1jj2N 115 2.89e+01 1ffkL c.12.1.1 63099 1bawA 105 3.22e+01 1plc b.6.1.1 22868 1fwyA 331 3.33e+01 1fwyA b.81.1.4 28064 c.68.1.5 34522 1kewA 361 3.37e+01 c.2.1.2 68544 1seiA 130 3.39e+01 1seiA d.140.1.1 41463 1def 147 3.42e+01 1bs4A d.167.1.1 42306 1prn 289 3.44e+01 3prn f.4.3.1 43762 1cojA 212 3.53e+01 1avmA a.2.11.1 15737 d.44.1.1 38734 1i50C 318 3.77e+01 d.74.3.1 61756 d.181.1.1 61757 1f7dA 136 3.88e+01 1dun b.85.4.1 28353 1v74A 107 3.94e+01 1ffkL 115 3.96e+01 1ffkL c.12.1.1 30881