# List of top-scoring protein chains for T0196.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1jnyA 435 4.02e-05 b.43.3.1 66982 b.44.1.1 66983 c.37.1.8 66984 1f60A 458 7.33e-03 1efcA b.43.3.1 25705 b.44.1.1 25745 c.37.1.8 32140 1b23P 405 7.49e-02 1efcA b.43.3.1 25689 b.44.1.1 25729 c.37.1.8 32124 1eft 405 7.53e-02 1efcA b.43.3.1 25688 b.44.1.1 25728 c.37.1.8 32123 1mj1A 405 8.98e-02 i.1.1.1 79175 1aipA 405 9.68e-02 1efcA b.43.3.1 25697 b.44.1.1 25737 c.37.1.8 32132 1exmA 405 9.79e-02 1efcA b.43.3.1 25696 b.44.1.1 25736 c.37.1.8 32131 1o51A 114 1.58e-01 1pvmA 184 1.62e-01 1c8m2 252 3.65e-01 1aym2 1aym2 261 3.74e-01 1aym2 1efuA 385 3.88e-01 1efcA b.43.3.1 25682 b.44.1.1 25722 c.37.1.8 32115 1etu 379 3.93e-01 1efcA c.37.1.8 64737 1d8tA 393 3.93e-01 1efcA b.43.3.1 25686 b.44.1.1 25726 c.37.1.8 32119 1ob2A 393 3.93e-01 1efcA 393 3.93e-01 1efcA b.43.3.1 25680 b.44.1.1 25720 c.37.1.8 32113 1dg1G 394 3.94e-01 1efcA b.43.3.1 25684 b.44.1.1 25724 c.37.1.8 32117 1efm 379 3.97e-01 1efcA c.37.1.8 64732 1d1nA 99 4.61e-01 1d1nA b.43.3.1 25718 1g7sA 594 8.65e-01 1g7rA b.43.3.1 25712 b.43.3.1 25713 c.20.1.1 31032 c.37.1.8 32147 1b5fB 87 9.53e-01 1b5fB 1e19A 314 1.02e+00 1b7bA c.73.1.1 34967 1d3e2 252 1.09e+00 1d2eA 397 1.38e+00 1efcA b.43.3.1 25701 b.44.1.1 25741 c.37.1.8 32136 1imjA 210 1.72e+00 c.69.1.23 71246 1r26A 125 2.03e+00 1r1a2 263 2.37e+00 1aym2 1lf2A 331 4.46e+00 b.50.1.2 77914 1o4uA 285 4.98e+00 c.1.17.1 86624 d.41.2.1 86625 1fp0A 88 5.14e+00 1fp0A g.50.1.2 45361 1smeA 329 5.20e+00 1smrA b.50.1.2 26885 1lf4A 331 5.21e+00 b.50.1.2 77916 1pfzA 380 5.58e+00 1smrA b.50.1.2 26881 1r5bA 467 6.13e+00 1bmqB 88 6.31e+00 1pauB 1dst 228 6.84e+00 1a7s b.47.1.2 26318 1p16A 395 7.41e+00 b.40.4.6 87661 d.142.2.3 87662 1df9A 191 7.53e+00 1befA b.47.1.3 26420 2a0b 125 7.69e+00 2a0b a.24.10.1 16630 1bio 228 8.51e+00 5ptp b.47.1.2 26314 1ix5A 151 8.74e+00 d.26.1.1 83763 1b35A 260 8.86e+00 1b35A b.121.4.1 23333 1fdpA 235 9.03e+00 5ptp b.47.1.2 26322 1sb8A 352 9.72e+00 1ibcB 88 1.00e+01 1pauB 1oc3A 172 1.01e+01 1s1hQ 76 1.08e+01 1g2qA 187 1.09e+01 c.61.1.1 65117 1eagA 342 1.25e+01 1eagA b.50.1.2 26826 1jy1A 464 1.29e+01 d.136.1.3 67438 d.136.1.3 67439 1kkqA 269 1.31e+01 a.123.1.1 68679 1i58A 189 1.35e+01 1b3qA d.122.1.3 61773 1i7gA 287 1.37e+01 a.123.1.1 71121 1szwA 379 1.37e+01 1qjoA 80 1.38e+01 1iyu b.84.1.1 28229 1i5dA 191 1.46e+01 1b3qA d.122.1.3 61783 1iz7A 295 1.47e+01 c.69.1.8 76982 1g42A 295 1.48e+01 c.69.1.8 65139 1cv2A 296 1.48e+01 1bn6A c.69.1.8 34680 1ae9A 179 1.56e+01 1ae9A d.163.1.1 42153 1sixA 174 1.57e+01 1d0hA 469 1.58e+01 1a8d b.29.1.6 24265 b.42.4.2 25610 1zap 342 1.65e+01 1eagA b.50.1.2 26827 1lw6I 64 1.65e+01 d.40.1.1 74294 1b3qA 379 1.72e+01 1b3qA a.30.2.1 16993 b.40.7.1 25454 d.122.1.3 41112 1ghqB 134 1.73e+01 1ghqB g.18.1.1 60522 g.18.1.1 60523 1ly2A 130 1.76e+01 g.18.1.1 74335 g.18.1.1 74336 1m9nA 613 1.79e+01 c.24.1.3 78870 c.97.2.1 78871 1ifqA 138 1.89e+01 1ifqA d.110.4.1 62350 1nm7A 69 1.92e+01 b.34.2.1 85871 1si7A 369 2.16e+01 1qnhA 170 2.19e+01 2cpl b.62.1.1 27508 1qngA 170 2.22e+01 2cpl b.62.1.1 27507 1lvbA 243 2.27e+01 b.47.1.3 78234 1p85I 123 2.35e+01 i.1.1.1 87878 1b9kA 238 2.38e+01 1qtsA b.1.10.1 22315 d.105.1.1 40791 1qzqA 483 2.49e+01 1kyfA 247 2.51e+01 b.1.10.1 73220 d.105.1.1 73221 1rwsA 77 2.52e+01 1gbs 185 2.56e+01 153l d.2.1.5 36986 1peqA 714 2.65e+01 1fpn2 261 2.66e+01 1aym2 1k7lA 288 2.66e+01 a.123.1.1 68268 1p7dA 282 2.67e+01 1kamA 194 2.70e+01 c.26.1.3 72254 1kk3A 410 2.84e+01 b.43.3.1 72640 b.44.1.1 72641 c.37.1.8 72642 1n9eA 787 2.84e+01 1lvmA 229 2.89e+01 b.47.1.3 78243 1miqA 375 2.96e+01 b.50.1.2 79151 1uh6A 100 2.98e+01 1uslA 170 3.01e+01 1mj5A 302 3.15e+01 1gwnA 205 3.18e+01 c.37.1.8 70672 1jxhA 288 3.26e+01 c.72.1.2 67415 1qq7A 252 3.29e+01 1qq5A c.108.1.1 43329 1qq5A 253 3.32e+01 1qq5A c.108.1.1 43327 1sknP 92 3.35e+01 1sknP a.37.1.1 17127 1oqeA 144 3.36e+01 b.22.1.1 87286 1aq6A 253 3.43e+01 1qq5A c.108.1.1 43331 1ihnA 113 3.43e+01 1ihnA c.103.1.1 62388 1ehwA 162 3.45e+01 1npk d.58.6.1 39088 1otz 148 3.46e+01 1kxgA 152 3.54e+01 b.22.1.1 73145 1rffA 485 3.56e+01 1j71A 334 3.56e+01 1eagA b.50.1.2 62669 1sq6A 253 3.67e+01 1kd7A 164 3.72e+01 b.22.1.1 77331 2fmr 65 3.77e+01 2fmr d.51.1.1 38808 1dbrA 231 3.78e+01 1qk3A c.61.1.1 34041 1vjzA 341 3.78e+01 1fsgA 233 3.79e+01 1qk3A c.61.1.1 34029 1bccA 446 3.92e+01 1be3A d.185.1.1 58946 d.185.1.1 58947