# List of top-scoring protein chains for t04-100-40-40-str2+CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1jnyA 435 8.69e-06 b.43.3.1 66982 b.44.1.1 66983 c.37.1.8 66984 1g7sA 594 1.16e-04 1g7rA b.43.3.1 25712 b.43.3.1 25713 c.20.1.1 31032 c.37.1.8 32147 1f60A 458 7.10e-03 1efcA b.43.3.1 25705 b.44.1.1 25745 c.37.1.8 32140 1d2eA 397 3.07e-02 1efcA b.43.3.1 25701 b.44.1.1 25741 c.37.1.8 32136 1exmA 405 1.10e-01 1efcA b.43.3.1 25696 b.44.1.1 25736 c.37.1.8 32131 1d1nA 99 1.46e-01 1d1nA b.43.3.1 25718 1ha3A 405 1.75e-01 1efcA b.43.3.1 60869 b.44.1.1 60870 c.37.1.8 60871 1mp9A 198 2.23e-01 1hdmA 201 2.35e-01 1iakA b.1.1.2 21583 d.19.1.1 38157 1fjgL 135 5.27e-01 1fjfL b.40.4.5 25346 1njkA 156 7.39e-01 d.38.1.1 85818 1f1gA 154 1.26e+00 b.1.8.1 76153 1uvqB 198 1.29e+00 1jcv 153 1.41e+00 1mfmA b.1.8.1 22279 1ifrA 121 1.55e+00 b.1.16.1 71203 1nb5I 98 1.68e+00 d.17.1.2 80381 1tib 269 1.70e+00 3tgl c.69.1.17 34738 1h8eA 510 1.97e+00 1skyB a.69.1.1 60738 b.49.1.1 60739 c.37.1.11 60740 1q2bA 434 2.04e+00 1egnA 434 2.81e+00 1celA b.29.1.10 59411 1e79A 510 2.89e+00 1skyB a.69.1.1 18269 b.49.1.1 26434 c.37.1.11 32314 1ddwA 120 3.05e+00 1evhA b.55.1.4 27001 1aonO 97 3.39e+00 b.35.1.1 24642 1q5hA 147 3.71e+00 1gt6A 269 3.90e+00 c.69.1.17 76342 6cel 434 4.08e+00 1celA b.29.1.10 24279 1i50K 120 4.11e+00 d.74.3.2 61765 1chuA 540 4.15e+00 1chuA a.7.3.1 16325 c.3.1.4 30424 d.168.1.1 42307 1k0rA 366 4.61e+00 b.40.4.5 67961 d.52.3.1 67962 d.52.3.1 67963 d.202.1.1 67964 1iw7C 1119 4.71e+00 e.29.1.1 71474 1dcs 311 5.06e+00 1dcs b.82.2.1 28124 1ckmA 330 5.47e+00 1ckmA b.40.4.6 25358 d.142.2.3 41585 1qqgA 264 6.24e+00 1qqgA b.55.1.2 26987 b.55.1.2 26988 1k82A 268 6.28e+00 a.156.1.2 75866 b.113.1.1 75867 g.39.1.8 75868 1hh2P 344 6.31e+00 b.40.4.5 65835 d.52.3.1 65836 d.52.3.1 65837 d.202.1.1 65838 1rovA 857 6.44e+00 1fxjA 331 6.98e+00 1fwyA b.81.1.4 28062 c.68.1.5 34520 1ee8A 266 7.00e+00 1ee8A a.156.1.2 75823 b.113.1.1 75824 g.39.1.8 75825 1dar 691 7.04e+00 1dar b.43.3.1 25707 c.37.1.8 32142 d.14.1.1 37547 d.58.11.1 39300 1q7bA 244 7.17e+00 1m4zA 238 7.54e+00 b.34.12.1 78630 1vom 762 8.09e+00 1lvk b.34.3.1 24577 c.37.1.9 32174 1dq3A 454 8.32e+00 1dq3A b.86.1.2 28380 d.50.3.1 38798 d.95.2.2 40585 d.95.2.2 40586 1lw6I 64 8.50e+00 d.40.1.1 74294 1uch 230 9.02e+00 1uch d.3.1.6 37129 1ll8A 114 9.30e+00 d.110.3.5 78089 1at0 145 9.32e+00 1at0 b.86.1.1 28374 1rrpB 134 9.54e+00 1rrpB b.55.1.3 26995 1rzhH 260 9.90e+00 1g8lA 411 1.01e+01 1g8lA b.85.6.1 60365 b.103.1.1 60366 c.57.1.2 60367 1f20A 435 1.02e+01 b.43.4.1 64932 c.25.1.4 64933 1vhsA 175 1.02e+01 1ejxB 101 1.03e+01 b.85.3.1 83183 1lj5A 379 1.03e+01 e.1.1.1 73928 1bwwA 109 1.11e+01 8fabA b.1.1.1 20518 1aisA 182 1.11e+01 1ytbA d.129.1.1 41288 d.129.1.1 41289 1qnaA 200 1.17e+01 1ytbA d.129.1.1 41226 d.129.1.1 41227 1dwkA 156 1.18e+01 1dw9A a.35.1.4 17075 d.72.1.1 39606 1nzhA 282 1.20e+01 1uj2A 252 1.23e+01 1tul 108 1.36e+01 1tul b.85.5.1 28373 1qovH 260 1.40e+01 6prcH b.41.1.1 25464 f.23.10.1 43457 1ejrB 101 1.41e+01 1ubpB b.85.3.1 28320 1vjfA 180 1.44e+01 1ri6A 343 1.49e+01 1uvqA 197 1.51e+01 1ly2A 130 1.55e+01 g.18.1.1 74335 g.18.1.1 74336 1hv9A 456 1.62e+01 1fwyA b.81.1.4 28060 c.68.1.5 34518 1eso 154 1.64e+01 1yaiA b.1.8.1 22293 1uwcA 261 1.66e+01 1lfo 128 1.67e+01 1hmt b.60.1.2 27223 1inlA 296 1.73e+01 c.66.1.17 66220 1bec 238 1.74e+01 1bec b.1.1.1 20627 b.1.1.2 21561 1lla 628 1.80e+01 1lla a.85.1.1 18485 a.86.1.1 18496 b.1.18.3 21861 1m4vA 204 1.80e+01 b.40.2.2 74459 d.15.6.1 74460 1h2wA 710 1.81e+01 b.69.7.1 76596 c.69.1.4 76597 1gotB 340 1.83e+01 1tbgA b.69.4.1 27648 1luzA 88 1.84e+01 b.40.4.5 74271 1ewfA 456 1.85e+01 1bp1 d.83.1.1 40024 d.83.1.1 40025 1nzoA 363 1.85e+01 1m6pA 152 1.90e+01 1m6pA b.64.1.1 27519 1h9dB 134 1.97e+01 2jhbA b.54.1.1 60822 1nj4A 363 2.11e+01 b.105.1.1 80545 e.3.1.1 80546 1cq3A 233 2.19e+01 1cq3A b.27.1.1 23923 1pk6A 133 2.22e+01 4ubpB 126 2.35e+01 1ubpB b.85.3.1 28345 1st0A 337 2.38e+01 1i19A 561 2.40e+01 1i19A d.58.32.3 61522 d.145.1.1 61523 1nbwA 607 2.41e+01 c.8.6.1 80393 c.55.1.6 80394 c.55.1.6 80395 1forL 210 2.42e+01 8fabA b.1.1.1 19988 b.1.1.2 21044 1ounA 127 2.46e+01 1ounA d.17.4.2 38090 1fzyA 149 2.48e+01 d.20.1.1 65072 1cjcA 460 2.49e+01 1cjcA c.3.1.1 30319 c.4.1.1 30604 1qfmA 710 2.52e+01 1qfmA b.69.7.1 27673 c.69.1.4 34641 1ghj 79 2.53e+01 1ghj b.84.1.1 28232 1que 303 2.56e+01 1fnc b.43.4.2 25647 c.25.1.1 31537 1lam 484 2.60e+01 1lam c.56.5.3 33829 c.50.1.1 33166 1tia 279 2.61e+01 3tgl c.69.1.17 34737 1sdoA 203 2.63e+01 1qynA 153 2.64e+01 1h6hA 143 2.69e+01 d.189.1.1 65681 1ghqB 134 2.75e+01 1ghqB g.18.1.1 60522 g.18.1.1 60523 1cr1A 296 2.77e+01 1cr1A c.37.1.11 32286 1dxrH 258 2.78e+01 6prcH b.41.1.1 25456 f.23.10.1 43433 1g6eA 87 2.81e+01 1g6eA b.11.1.6 60317 1bcpD 110 2.82e+01 1bcpD b.40.2.1 25132 1a7cA 379 2.84e+01 1sek e.1.1.1 42660 1o5uA 101 2.86e+01 1mdc 133 2.89e+01 1hmt b.60.1.2 27198 1iyhA 198 2.90e+01 a.45.1.1 83790 c.47.1.5 83791 1ogsA 497 2.94e+01 b.71.1.2 86997 c.1.8.3 86998 2sfa 191 2.96e+01 1qq4A b.47.1.1 25815 1eazA 125 2.96e+01 b.55.1.1 70113 1fjgQ 105 2.97e+01 1fjfQ b.40.4.5 25352 1qy6A 274 3.01e+01 1px5A 349 3.06e+01 1fi2A 201 3.07e+01 1fi2A b.82.1.2 59845 1n0lA 224 3.07e+01 b.1.11.1 79744 b.7.2.1 79745 1qhtA 775 3.15e+01 1tgoA c.55.3.5 33722 e.8.1.1 43011 1sltA 134 3.17e+01 1c1lA b.29.1.3 24186 1j5pA 253 3.18e+01 c.2.1.3 83092 d.81.1.3 71577 1fts 295 3.21e+01 1ng1 a.24.13.1 16968 c.37.1.10 32279 1a3aA 148 3.39e+01 1a3aA d.112.1.1 40917 1ko3A 230 3.42e+01 1kmtA 141 3.46e+01 b.1.18.8 77442 1jzuA 157 3.47e+01 b.60.1.1 84271 1nepA 130 3.55e+01 b.1.18.7 80440 1l0qA 391 3.68e+01 b.1.3.1 77644 b.69.2.3 77645 1bpoA 494 3.70e+01 1bpoA a.118.1.4 19143 b.69.6.1 27670 1yaiA 151 3.78e+01 1yaiA b.1.8.1 22289 1jatA 155 3.88e+01 1u9aA d.20.1.1 62818 1j05A 111 3.91e+01 1ayoA 130 3.93e+01 1ayoA b.2.4.1 22431 1iznA 286 3.93e+01 e.43.1.1 83847 1j8rA 196 3.98e+01 1j8rA b.2.3.3 62745