# List of top-scoring protein chains for t04-100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1jnyA 435 2.20e-06 b.43.3.1 66982 b.44.1.1 66983 c.37.1.8 66984 1g7sA 594 5.27e-05 1g7rA b.43.3.1 25712 b.43.3.1 25713 c.20.1.1 31032 c.37.1.8 32147 1f60A 458 9.58e-04 1efcA b.43.3.1 25705 b.44.1.1 25745 c.37.1.8 32140 1exmA 405 2.99e-03 1efcA b.43.3.1 25696 b.44.1.1 25736 c.37.1.8 32131 1ha3A 405 3.11e-03 1efcA b.43.3.1 60869 b.44.1.1 60870 c.37.1.8 60871 1d2eA 397 3.01e-02 1efcA b.43.3.1 25701 b.44.1.1 25741 c.37.1.8 32136 1d1nA 99 1.30e-01 1d1nA b.43.3.1 25718 1e79A 510 1.08e+00 1skyB a.69.1.1 18269 b.49.1.1 26434 c.37.1.11 32314 1h8eA 510 1.13e+00 1skyB a.69.1.1 60738 b.49.1.1 60739 c.37.1.11 60740 1uvqB 198 1.40e+00 1f1gA 154 4.80e+00 b.1.8.1 76153 1jcv 153 5.25e+00 1mfmA b.1.8.1 22279 1eazA 125 7.62e+00 b.55.1.1 70113 1dar 691 8.31e+00 1dar b.43.3.1 25707 c.37.1.8 32142 d.14.1.1 37547 d.58.11.1 39300 1ddwA 120 8.56e+00 1evhA b.55.1.4 27001 1lvwA 295 9.13e+00 c.68.1.6 84723 1hh2P 344 1.03e+01 b.40.4.5 65835 d.52.3.1 65836 d.52.3.1 65837 d.202.1.1 65838 1n0uA 842 1.10e+01 b.43.3.1 79757 c.37.1.8 79758 d.14.1.1 79759 d.58.11.1 79760 d.58.11.1 79761 2hgsA 474 1.14e+01 2hgsA c.30.1.4 31722 d.142.1.6 75997 1k4nA 192 1.18e+01 d.32.1.5 72059 1mp9A 198 1.22e+01 1kxgA 152 1.32e+01 b.22.1.1 73145 1ogsA 497 1.34e+01 b.71.1.2 86997 c.1.8.3 86998 1ecrA 309 1.40e+01 1ecrA e.2.1.1 42678 1go3E 187 1.43e+01 b.40.4.5 83054 d.230.1.1 83055 1ly2A 130 1.45e+01 g.18.1.1 74335 g.18.1.1 74336 1tib 269 1.59e+01 3tgl c.69.1.17 34738 1r94A 118 1.65e+01 1k82A 268 1.77e+01 a.156.1.2 75866 b.113.1.1 75867 g.39.1.8 75868 1hdmA 201 1.85e+01 1iakA b.1.1.2 21583 d.19.1.1 38157 1aun 208 1.93e+01 1thv b.25.1.1 23900 1gt6A 269 1.95e+01 c.69.1.17 76342 1b5fB 87 2.02e+01 1b5fB 1e3dB 542 2.35e+01 1h2rL e.18.1.1 59189 1fmtA 314 2.44e+01 1fmtA b.46.1.1 25758 c.65.1.1 34174 1uj2A 252 2.45e+01 1h2rL 534 2.48e+01 1h2rL e.18.1.1 43298 1ghqB 134 2.68e+01 1ghqB g.18.1.1 60522 g.18.1.1 60523 1lvmA 229 2.85e+01 b.47.1.3 78243 1p32A 209 2.89e+01 1p32A d.25.1.1 38379 1g8lA 411 2.90e+01 1g8lA b.85.6.1 60365 b.103.1.1 60366 c.57.1.2 60367 1pvmA 184 3.05e+01 1ubkL 534 3.09e+01 e.18.1.1 88422 1rovA 857 3.10e+01 1iwdA 215 3.21e+01 d.3.1.1 83756 1j6qA 136 3.25e+01 b.40.9.1 77091 1jyhA 157 3.30e+01 d.60.1.3 71956 1bwwA 109 3.39e+01 8fabA b.1.1.1 20518 1njkA 156 3.47e+01 d.38.1.1 85818 1ep0A 185 3.53e+01 1dzrA b.82.1.1 28080 1k2eA 156 3.53e+01 d.113.1.1 72010 1q5hA 147 3.60e+01 1ewkA 490 3.64e+01 1ewkA c.93.1.1 35712 1i8dA 213 3.66e+01 b.43.4.3 61953 b.43.4.3 61954 1efvA 315 3.91e+01 1efvA c.26.2.3 31633 c.31.1.2 31728