# List of top-scoring protein chains for t04-100-30-str2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1jnyA 435 9.03e-08 b.43.3.1 66982 b.44.1.1 66983 c.37.1.8 66984 1g7sA 594 7.08e-06 1g7rA b.43.3.1 25712 b.43.3.1 25713 c.20.1.1 31032 c.37.1.8 32147 1f60A 458 6.29e-05 1efcA b.43.3.1 25705 b.44.1.1 25745 c.37.1.8 32140 1exmA 405 1.39e-03 1efcA b.43.3.1 25696 b.44.1.1 25736 c.37.1.8 32131 1ha3A 405 2.40e-03 1efcA b.43.3.1 60869 b.44.1.1 60870 c.37.1.8 60871 1d2eA 397 4.81e-03 1efcA b.43.3.1 25701 b.44.1.1 25741 c.37.1.8 32136 1h8eA 510 2.42e-01 1skyB a.69.1.1 60738 b.49.1.1 60739 c.37.1.11 60740 1e79A 510 2.69e-01 1skyB a.69.1.1 18269 b.49.1.1 26434 c.37.1.11 32314 1f1gA 154 3.87e-01 b.1.8.1 76153 1jcv 153 4.41e-01 1mfmA b.1.8.1 22279 1n0uA 842 5.82e-01 b.43.3.1 79757 c.37.1.8 79758 d.14.1.1 79759 d.58.11.1 79760 d.58.11.1 79761 1tib 269 6.77e-01 3tgl c.69.1.17 34738 1d1nA 99 9.98e-01 1d1nA b.43.3.1 25718 1gt6A 269 1.08e+00 c.69.1.17 76342 1njkA 156 1.48e+00 d.38.1.1 85818 1uvqB 198 1.62e+00 1ogsA 497 1.77e+00 b.71.1.2 86997 c.1.8.3 86998 1mp9A 198 1.99e+00 1b5fB 87 2.09e+00 1b5fB 1ly2A 130 2.24e+00 g.18.1.1 74335 g.18.1.1 74336 1hh2P 344 2.43e+00 b.40.4.5 65835 d.52.3.1 65836 d.52.3.1 65837 d.202.1.1 65838 1dar 691 2.71e+00 1dar b.43.3.1 25707 c.37.1.8 32142 d.14.1.1 37547 d.58.11.1 39300 1uj2A 252 2.80e+00 1hdmA 201 2.95e+00 1iakA b.1.1.2 21583 d.19.1.1 38157 1nb5I 98 3.37e+00 d.17.1.2 80381 1fmtA 314 3.41e+00 1fmtA b.46.1.1 25758 c.65.1.1 34174 1eazA 125 4.09e+00 b.55.1.1 70113 1at0 145 4.85e+00 1at0 b.86.1.1 28374 1qz5A 375 5.09e+00 1ddwA 120 5.27e+00 1evhA b.55.1.4 27001 1ghqB 134 5.88e+00 1ghqB g.18.1.1 60522 g.18.1.1 60523 1bwwA 109 6.13e+00 8fabA b.1.1.1 20518 1qqgA 264 6.82e+00 1qqgA b.55.1.2 26987 b.55.1.2 26988 1chuA 540 7.17e+00 1chuA a.7.3.1 16325 c.3.1.4 30424 d.168.1.1 42307 1e1oA 504 7.20e+00 1lylA b.40.4.1 25258 d.104.1.1 40714 1j6zA 376 7.35e+00 1yagA c.55.1.1 62667 c.55.1.1 62668 1mq7A 154 8.38e+00 b.85.4.1 79404 1vhoA 346 8.44e+00 1kk1A 410 8.52e+00 b.43.3.1 72634 b.44.1.1 72635 c.37.1.8 72636 1sixA 174 9.11e+00 1gppA 237 9.32e+00 b.86.1.2 76262 1uwcA 261 9.45e+00 1k4nA 192 9.49e+00 d.32.1.5 72059 1iznA 286 1.00e+01 e.43.1.1 83847 1uxzA 131 1.03e+01 1gv9A 260 1.09e+01 b.29.1.13 70596 2sli 679 1.10e+01 2sli b.29.1.9 24274 b.68.1.1 27611 1fxjA 331 1.15e+01 1fwyA b.81.1.4 28062 c.68.1.5 34520 1lvwA 295 1.18e+01 c.68.1.6 84723 1st0A 337 1.25e+01 1psuA 140 1.31e+01 d.38.1.5 88285 1iq8A 582 1.32e+01 b.122.1.1 83074 c.1.20.1 71270 d.17.6.1 83075 1lw6I 64 1.32e+01 d.40.1.1 74294 1pyaB 228 1.33e+01 1pyaB 1ah6 220 1.37e+01 1yer d.122.1.1 41094 1h9dB 134 1.42e+01 2jhbA b.54.1.1 60822 1p7tA 731 1.44e+01 1lylA 504 1.52e+01 1lylA b.40.4.1 25261 d.104.1.1 40717 1dq3A 454 1.55e+01 1dq3A b.86.1.2 28380 d.50.3.1 38798 d.95.2.2 40585 d.95.2.2 40586 1ei5A 520 1.57e+01 1ei5A b.61.3.1 27418 b.61.3.1 27419 e.3.1.1 42772 1iwdA 215 1.61e+01 d.3.1.1 83756 1blxA 326 1.63e+01 1hcl d.144.1.7 41596 1qwyA 291 1.65e+01 1rovA 857 1.66e+01 1ytfC 79 1.67e+01 1ytfC b.56.1.1 27010 1aun 208 1.68e+01 1thv b.25.1.1 23900 1ln1A 214 1.73e+01 d.129.3.2 74038 1k82A 268 1.85e+01 a.156.1.2 75866 b.113.1.1 75867 g.39.1.8 75868 1g6eA 87 1.98e+01 1g6eA b.11.1.6 60317 1ogpA 393 2.01e+01 1kyfA 247 2.03e+01 b.1.10.1 73220 d.105.1.1 73221 1gpr 162 2.09e+01 1gpr b.84.3.1 28267 1go3E 187 2.12e+01 b.40.4.5 83054 d.230.1.1 83055 1brwA 433 2.15e+01 1brwA a.46.2.1 17764 c.27.1.1 31628 d.41.3.1 38626 1tia 279 2.15e+01 3tgl c.69.1.17 34737 1pvmA 184 2.16e+01 1nh2C 79 2.20e+01 6cel 434 2.34e+01 1celA b.29.1.10 24279 1h6lA 353 2.35e+01 b.68.3.1 60687 1q5hA 147 2.44e+01 1aonO 97 2.46e+01 b.35.1.1 24642 1ifrA 121 2.50e+01 b.1.16.1 71203 1q2bA 434 2.53e+01 1ewfA 456 2.54e+01 1bp1 d.83.1.1 40024 d.83.1.1 40025 1lvmA 229 2.68e+01 b.47.1.3 78243 1t8hA 277 2.74e+01 1i9zA 347 2.79e+01 1i9yA d.151.1.2 62102 2hgsA 474 2.80e+01 2hgsA c.30.1.4 31722 d.142.1.6 75997 3rabA 169 2.82e+01 1ctqA c.37.1.8 32018 1m26A 133 2.83e+01 1hv9A 456 2.84e+01 1fwyA b.81.1.4 28060 c.68.1.5 34518 1itwA 741 2.85e+01 c.77.1.2 76793 1cq3A 233 2.86e+01 1cq3A b.27.1.1 23923 1egnA 434 2.90e+01 1celA b.29.1.10 59411 1f3lA 321 2.93e+01 1g6q2 c.66.1.6 59630 1nnxA 109 3.01e+01 1ae9A 179 3.09e+01 1ae9A d.163.1.1 42153 1cv8 174 3.10e+01 1cv8 d.3.1.1 37089 1pk6B 132 3.20e+01 1gwyA 175 3.26e+01 b.97.1.1 83356 1jyhA 157 3.37e+01 d.60.1.3 71956 1jpaA 312 3.42e+01 d.144.1.7 67011 1n7vA 555 3.44e+01 b.126.1.1 85377 1em2A 229 3.48e+01 1em2A d.129.3.2 41321 1d5tA 433 3.48e+01 1gnd c.3.1.3 30422 d.16.1.6 37986 1qtsA 247 3.54e+01 1qtsA b.1.10.1 22313 d.105.1.1 40789 1cr1A 296 3.70e+01 1cr1A c.37.1.11 32286 1i8dA 213 3.70e+01 b.43.4.3 61953 b.43.4.3 61954 2sfa 191 3.73e+01 1qq4A b.47.1.1 25815 2bltA 361 3.81e+01 1gceA e.3.1.1 42739 1cl1A 395 3.81e+01 1cl2A c.67.1.3 34395 1mqeA 207 3.84e+01