# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1jnyA 435 6.88e-06 b.43.3.1 66982 b.44.1.1 66983 c.37.1.8 66984 1g7sA 594 3.21e-04 1g7rA b.43.3.1 25712 b.43.3.1 25713 c.20.1.1 31032 c.37.1.8 32147 1f60A 458 1.13e-03 1efcA b.43.3.1 25705 b.44.1.1 25745 c.37.1.8 32140 1exmA 405 1.07e-02 1efcA b.43.3.1 25696 b.44.1.1 25736 c.37.1.8 32131 1ha3A 405 1.24e-02 1efcA b.43.3.1 60869 b.44.1.1 60870 c.37.1.8 60871 1d2eA 397 1.31e-01 1efcA b.43.3.1 25701 b.44.1.1 25741 c.37.1.8 32136 1d1nA 99 2.59e-01 1d1nA b.43.3.1 25718 1uvqB 198 2.09e+00 1f1gA 154 3.08e+00 b.1.8.1 76153 1jcv 153 3.36e+00 1mfmA b.1.8.1 22279 1h8eA 510 3.50e+00 1skyB a.69.1.1 60738 b.49.1.1 60739 c.37.1.11 60740 1e79A 510 4.15e+00 1skyB a.69.1.1 18269 b.49.1.1 26434 c.37.1.11 32314 1pvmA 184 5.10e+00 1tib 269 5.90e+00 3tgl c.69.1.17 34738 1hdmA 201 6.08e+00 1iakA b.1.1.2 21583 d.19.1.1 38157 1lw6I 64 6.40e+00 d.40.1.1 74294 1is3A 135 8.34e+00 b.29.1.3 76773 1ogsA 497 1.05e+01 b.71.1.2 86997 c.1.8.3 86998 1n0uA 842 1.05e+01 b.43.3.1 79757 c.37.1.8 79758 d.14.1.1 79759 d.58.11.1 79760 d.58.11.1 79761 1gt6A 269 1.06e+01 c.69.1.17 76342 1q5hA 147 1.14e+01 1k4nA 192 1.18e+01 d.32.1.5 72059 1b5fB 87 1.25e+01 1b5fB 1ddwA 120 1.29e+01 1evhA b.55.1.4 27001 1eazA 125 1.36e+01 b.55.1.1 70113 1ecrA 309 1.42e+01 1ecrA e.2.1.1 42678 1ly2A 130 1.44e+01 g.18.1.1 74335 g.18.1.1 74336 1aun 208 1.66e+01 1thv b.25.1.1 23900 1i9zA 347 1.67e+01 1i9yA d.151.1.2 62102 2hgsA 474 1.71e+01 2hgsA c.30.1.4 31722 d.142.1.6 75997 1njkA 156 2.00e+01 d.38.1.1 85818 1ghqB 134 2.42e+01 1ghqB g.18.1.1 60522 g.18.1.1 60523 1kxgA 152 2.45e+01 b.22.1.1 73145 1bwwA 109 2.46e+01 8fabA b.1.1.1 20518 1k82A 268 2.48e+01 a.156.1.2 75866 b.113.1.1 75867 g.39.1.8 75868 1lvwA 295 2.53e+01 c.68.1.6 84723 1mp9A 198 2.68e+01 1aonO 97 2.77e+01 b.35.1.1 24642 1l1oC 181 2.78e+01 b.40.4.3 73480 1qz5A 375 2.85e+01 1h9dB 134 3.22e+01 2jhbA b.54.1.1 60822 1fmtA 314 3.26e+01 1fmtA b.46.1.1 25758 c.65.1.1 34174 1qlwA 328 3.46e+01 1qlwA c.69.1.15 34722 1fo8A 343 3.87e+01 1foaA c.68.1.10 59927 1j6zA 376 3.94e+01 1yagA c.55.1.1 62667 c.55.1.1 62668 1ee8A 266 3.97e+01 1ee8A a.156.1.2 75823 b.113.1.1 75824 g.39.1.8 75825