# List of top-scoring protein chains for t04-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1jnyA 435 6.65e-06 b.43.3.1 66982 b.44.1.1 66983 c.37.1.8 66984 1g7sA 594 1.54e-04 1g7rA b.43.3.1 25712 b.43.3.1 25713 c.20.1.1 31032 c.37.1.8 32147 1f60A 458 1.58e-03 1efcA b.43.3.1 25705 b.44.1.1 25745 c.37.1.8 32140 1exmA 405 7.55e-03 1efcA b.43.3.1 25696 b.44.1.1 25736 c.37.1.8 32131 1ha3A 405 1.11e-02 1efcA b.43.3.1 60869 b.44.1.1 60870 c.37.1.8 60871 1d2eA 397 6.10e-02 1efcA b.43.3.1 25701 b.44.1.1 25741 c.37.1.8 32136 1h8eA 510 4.54e-01 1skyB a.69.1.1 60738 b.49.1.1 60739 c.37.1.11 60740 1e79A 510 5.22e-01 1skyB a.69.1.1 18269 b.49.1.1 26434 c.37.1.11 32314 1d1nA 99 7.09e-01 1d1nA b.43.3.1 25718 1f1gA 154 2.02e+00 b.1.8.1 76153 1jcv 153 2.28e+00 1mfmA b.1.8.1 22279 1uvqB 198 2.98e+00 1ecrA 309 5.78e+00 1ecrA e.2.1.1 42678 1n0uA 842 5.80e+00 b.43.3.1 79757 c.37.1.8 79758 d.14.1.1 79759 d.58.11.1 79760 d.58.11.1 79761 1hdmA 201 7.47e+00 1iakA b.1.1.2 21583 d.19.1.1 38157 1ogsA 497 7.48e+00 b.71.1.2 86997 c.1.8.3 86998 1q5hA 147 7.92e+00 1lw6I 64 8.32e+00 d.40.1.1 74294 1aun 208 9.10e+00 1thv b.25.1.1 23900 1lvwA 295 9.66e+00 c.68.1.6 84723 1dar 691 1.11e+01 1dar b.43.3.1 25707 c.37.1.8 32142 d.14.1.1 37547 d.58.11.1 39300 1mp9A 198 1.20e+01 1b5fB 87 1.26e+01 1b5fB 1a41 234 1.53e+01 1a41 d.163.1.2 42174 1tib 269 1.55e+01 3tgl c.69.1.17 34738 1dq3A 454 1.57e+01 1dq3A b.86.1.2 28380 d.50.3.1 38798 d.95.2.2 40585 d.95.2.2 40586 1ddwA 120 1.76e+01 1evhA b.55.1.4 27001 1fmtA 314 1.77e+01 1fmtA b.46.1.1 25758 c.65.1.1 34174 1gt6A 269 1.92e+01 c.69.1.17 76342 1bwwA 109 1.95e+01 8fabA b.1.1.1 20518 1shbA 104 1.96e+01 1fmk d.93.1.1 40425 1kay 381 2.00e+01 1ba1 c.55.1.1 33385 c.55.1.1 33386 1am2 199 2.01e+01 1am2 b.86.1.2 28381 1o4rA 108 2.02e+01 1bupA 386 2.03e+01 1ba1 c.55.1.1 33377 c.55.1.1 33378 1shdA 107 2.08e+01 1fmk d.93.1.1 40440 1k4nA 192 2.17e+01 d.32.1.5 72059 1h9dB 134 2.18e+01 2jhbA b.54.1.1 60822 1kxgA 152 2.25e+01 b.22.1.1 73145 1hh2P 344 2.52e+01 b.40.4.5 65835 d.52.3.1 65836 d.52.3.1 65837 d.202.1.1 65838 1k2eA 156 2.56e+01 d.113.1.1 72010 1pk6A 133 2.67e+01 1ugiA 84 2.72e+01 1ugiA d.17.5.1 38125 1go3E 187 2.76e+01 b.40.4.5 83054 d.230.1.1 83055 1eazA 125 3.09e+01 b.55.1.1 70113 1luzA 88 3.11e+01 b.40.4.5 74271 1vj1A 363 3.26e+01 1ly2A 130 3.32e+01 g.18.1.1 74335 g.18.1.1 74336 1ughI 82 3.39e+01 1ugiA d.17.5.1 38133 1h6lA 353 3.53e+01 b.68.3.1 60687 1i9zA 347 3.65e+01 1i9yA d.151.1.2 62102 1gppA 237 3.72e+01 b.86.1.2 76262 1q2bA 434 3.79e+01 1is3A 135 3.84e+01 b.29.1.3 76773