# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1jnyA	435	1.25e-03		b.43.3.1	66982
				b.44.1.1	66983
				c.37.1.8	66984
1d1nA	99	2.58e-02	1d1nA	b.43.3.1	25718
1f60A	458	1.83e-01	1efcA	b.43.3.1	25705
				b.44.1.1	25745
				c.37.1.8	32140
1g7sA	594	4.34e-01	1g7rA	b.43.3.1	25712
				b.43.3.1	25713
				c.20.1.1	31032
				c.37.1.8	32147
1d2eA	397	9.86e-01	1efcA	b.43.3.1	25701
				b.44.1.1	25741
				c.37.1.8	32136
1ha3A	405	1.51e+00	1efcA	b.43.3.1	60869
				b.44.1.1	60870
				c.37.1.8	60871
1exmA	405	2.49e+00	1efcA	b.43.3.1	25696
				b.44.1.1	25736
				c.37.1.8	32131
1hdmA	201	2.50e+00	1iakA	b.1.1.2	21583
				d.19.1.1	38157
1fp0A	88	4.18e+00	1fp0A	g.50.1.2	45361
1bmqB	88	4.63e+00	1pauB		
1oe8A	211	7.12e+00		a.45.1.1	86905
				c.47.1.5	86906
1qtsA	247	1.10e+01	1qtsA	b.1.10.1	22313
				d.105.1.1	40789
1pvmA	184	1.10e+01			
1r0tB	62	1.27e+01			
1kyfA	247	1.55e+01		b.1.10.1	73220
				d.105.1.1	73221
1oroA	213	1.58e+01	1opr	c.61.1.1	34093
1aonO	97	1.60e+01		b.35.1.1	24642
1f1gA	154	1.70e+01		b.1.8.1	76153
1gpqA	135	1.71e+01		d.233.1.1	83295
1iyhA	198	1.73e+01		a.45.1.1	83790
				c.47.1.5	83791
1jcv	153	1.76e+01	1mfmA	b.1.8.1	22279
1uvqB	198	1.89e+01			
1ryp1	222	1.96e+01	1ryp1		
1cf2O	337	2.09e+01	1b7gO	c.2.1.3	29994
				d.81.1.1	39909
1kq6A	141	2.20e+01			
1ae9A	179	2.68e+01	1ae9A	d.163.1.1	42153
1el6A	219	2.79e+01	1el6B	d.182.1.1	42606
1ihnA	113	3.07e+01	1ihnA	c.103.1.1	62388
1opr	213	3.09e+01	1opr	c.61.1.1	34091
1qx2A	76	3.19e+01			
1is2A	661	3.22e+01		a.29.3.2	71382
				a.29.3.2	71383
				e.6.1.2	71384
1cojA	212	3.35e+01	1avmA	a.2.11.1	15737
				d.44.1.1	38734
1ubkL	534	3.54e+01		e.18.1.1	88422
1h2rL	534	3.83e+01	1h2rL	e.18.1.1	43298
1yaiA	151	3.99e+01	1yaiA	b.1.8.1	22289