;  SAM: prettyalign v3.5 (May 1, 2004) compiled 05/13/04_16:24:56
;  (c) 1992-2001 Regents of the University of California, Santa Cruz
;
;          Sequence Alignment and Modeling Software System
;         http://www.cse.ucsc.edu/research/compbio/sam.html
;
; ----------------- Citations (SAM, SAM-T2K, HMMs) --------------------
; R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
;  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
; K. Karplus, et al., What is the value added by human intervention in protein
;  structure prediction, Proteins: Stucture, Function, Genetics 45(S5):86--91, 2001.
; A. Krogh et al., Hidden Markov models in computational biology:
;  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
; ---------------------------------------------------------------------
                                                                      
                                                                      
T0196 ................................................................
1efcA skekfertkphvnvgtighvdhgkttltaaittvlaktyggaarafdqidnapeekargitint


                                                                      
                                                                      
T0196 ................................................................
1efcA shveydtptrhyahvdcpghadyvknmitgaaqmdgailvvaatdgpmpqtrehillgrqvgvp


                                                                      
                                                                      
T0196 ................................................................
1efcA yiivflnkcdmvddeellelvemevrellsqydfpgddtpivrgsalkalegdaeweakilela


                                   10        20        30        40   
                                    |         |         |         |   
T0196 .....................AHHHHHHGSGLFDFLKRKEVKEEEKIEILSKKPAGKVVVEEVV
1efcA gfldsyipeperaidkpfllp--------------------------------------IEDVF


            50        60        70        80        90       100      
             |         |         |         |         |         |      
T0196 NIMGKD.VIIGTVESGMIGVGFKVKGPSGIGGIVRIERNREKVEFAIAGDRIGISIEGKIGKVK
1efcA SISGRGtVVTGRVERGIIKVGEEVE---------------------------------------


       110                                                            
         |                                                            
T0196 KGDVLEIYQT......................................................
1efcA ----------ivgiketqkstctgvemfrklldegragenvgvllrgikreeiergqvlakpgt


                                                                      
                                                                      
T0196 ................................................................
1efcA ikphtkfesevyilskdeggrhtpffkgyrpqfyfrttdvtgtielpegvemvmpgdnikmvvt


                                      
                                      
T0196 ................................
1efcA lihpiamddglrfaireggrtvgagvvakvls