;  SAM: prettyalign v3.5 (May 1, 2004) compiled 05/13/04_16:24:56
;  (c) 1992-2001 Regents of the University of California, Santa Cruz
;
;          Sequence Alignment and Modeling Software System
;         http://www.cse.ucsc.edu/research/compbio/sam.html
;
; ----------------- Citations (SAM, SAM-T2K, HMMs) --------------------
; R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
;  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
; K. Karplus, et al., What is the value added by human intervention in protein
;  structure prediction, Proteins: Stucture, Function, Genetics 45(S5):86--91, 2001.
; A. Krogh et al., Hidden Markov models in computational biology:
;  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
; ---------------------------------------------------------------------
                                                               10     
                                                                |     
T0196 ahhhhhhgsglfdflkrkevkeeekieilskkpagkvvveevvnimgkd---------------
1efcA skekfer..........................................TKPHVNVGTIGHVDH


         20        30        40        50        60        70        8
          |         |         |         |         |         |         
T0196 ----------------------------------------------------------------
1efcA GKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD


      0        90       100       110       120       130       140   
      |         |         |         |         |         |         |   
T0196 ----------------------------------------------------------------
1efcA YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVE


          150       160       170       180       190       200       
            |         |         |         |         |         |       
T0196 ----------------------------------------------------------------
1efcA MEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPI


      210       220       230       240       250       260       270 
        |         |         |         |         |         |         | 
T0196 -----------VIIGTVESGMIGVGFKVKGPS----GIGGIVRIERNREKVEFAIAGDRIGISI
1efcA EDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLL


            280       290       300       310       320       330     
              |         |         |         |         |         |     
T0196 EG-KIGKVKKGDVL--------------------------------------------------
1efcA RGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIE


        340       350       360       370       380           
          |         |         |         |         |           
T0196 ---------------------------------------------------eiyqt
1efcA LPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVL-s....