PFRMAT SS
TARGET T0195
AUTHOR 4069-6308-1312 
METHOD This file is the result of combining several RDB files, specifically
METHOD T0195.t2k.dssp-ebghstl.rdb  (weight 1.53986)
METHOD T0195.t2k.stride-ebghtl.rdb  (weight 1.24869)
METHOD T0195.t2k.str.rdb  (weight 1.53983)
METHOD T0195.t2k.alpha.rdb  (weight 0.659012)
METHOD These files were combined by translating their predictions into EHL
METHOD predictions with tables generated by compare-real, and then combining
METHOD those predictions with weights proportional to their mutual information
METHOD with the EHL alphabet.  The comments from the individual files follow.
METHOD
METHOD Comments from T0195.t2k.dssp-ebghstl.rdb
METHOD ============================================
METHOD TARGET T0195
METHOD Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    7 (1 EBGHSTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0195.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 45
METHOD
METHOD ============================================
METHOD Comments from T0195.t2k.stride-ebghtl.rdb
METHOD ============================================
METHOD TARGET T0195
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    6 (1 EBGHTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0195.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 45
METHOD
METHOD ============================================
METHOD Comments from T0195.t2k.str.rdb
METHOD ============================================
METHOD TARGET T0195
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-str-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   13 (1 str )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0195.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 45
METHOD
METHOD ============================================
METHOD Comments from T0195.t2k.alpha.rdb
METHOD ============================================
METHOD TARGET T0195
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   11 (1 ABCDEFGHIST )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0195.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 45
METHOD
METHOD ============================================
MODEL 1
M C 0.84
K C 0.49
V E 0.52
V E 0.49
K E 0.48
E E 0.47
F E 0.47
S E 0.55
V E 0.53
C C 0.54
G C 0.79
G C 0.77
R E 0.55
L E 0.81
I E 0.86
K E 0.89
L E 0.88
S E 0.88
H E 0.77
N E 0.60
S C 0.56
N C 0.55
S C 0.52
T C 0.67
K C 0.82
T C 0.72
S C 0.66
M E 0.54
N E 0.66
V E 0.85
N E 0.90
I E 0.91
Y E 0.89
L E 0.71
P C 0.71
K C 0.76
H C 0.72
Y C 0.72
Y C 0.75
A C 0.68
Q C 0.67
D C 0.69
F C 0.72
P C 0.69
R C 0.71
N C 0.78
K C 0.84
R C 0.84
I C 0.83
P C 0.69
T E 0.87
V E 0.92
F E 0.91
Y E 0.90
L E 0.78
S C 0.55
G C 0.81
L C 0.78
T C 0.81
C C 0.85
T C 0.87
P H 0.63
D H 0.73
N H 0.75
A H 0.81
S H 0.82
E H 0.81
K H 0.78
A H 0.67
F H 0.69
W H 0.86
Q H 0.91
F H 0.93
Q H 0.94
A H 0.94
D H 0.92
K H 0.82
Y C 0.63
G C 0.91
F E 0.53
A E 0.91
I E 0.92
V E 0.90
F E 0.72
P C 0.62
D C 0.76
T C 0.79
S C 0.88
P C 0.84
R C 0.86
G C 0.84
D C 0.77
E C 0.63
V C 0.64
A C 0.71
N C 0.77
D C 0.78
P C 0.75
E C 0.67
G C 0.62
S C 0.61
W C 0.55
D C 0.57
F C 0.67
G C 0.78
Q C 0.78
G C 0.74
A C 0.65
G C 0.52
F E 0.66
Y E 0.67
L E 0.54
N C 0.57
A C 0.59
T C 0.59
Q C 0.60
E C 0.68
P C 0.60
Y C 0.56
A C 0.55
Q C 0.66
H C 0.81
Y C 0.60
Q C 0.46
M H 0.73
Y H 0.81
D H 0.85
Y H 0.86
I H 0.89
H H 0.89
K H 0.91
E H 0.90
L H 0.92
P H 0.94
Q H 0.94
T H 0.93
L H 0.90
D H 0.81
S H 0.66
H H 0.52
F C 0.69
N C 0.74
K C 0.68
N C 0.73
G C 0.65
D H 0.48
V H 0.58
K H 0.59
L H 0.55
D H 0.51
F H 0.42
L C 0.55
D C 0.69
N C 0.61
V E 0.52
A E 0.68
I E 0.78
T E 0.62
G C 0.58
H C 0.64
S C 0.66
M C 0.50
G H 0.56
G H 0.87
Y H 0.94
G H 0.95
A H 0.96
I H 0.96
C H 0.95
G H 0.94
Y H 0.91
L H 0.78
K H 0.56
G C 0.71
Y C 0.85
S C 0.85
G C 0.76
K C 0.71
R C 0.52
Y E 0.54
K E 0.61
S E 0.76
C E 0.69
S E 0.65
A E 0.56
F E 0.41
A C 0.53
P C 0.55
I C 0.57
V C 0.67
N C 0.80
P H 0.52
S H 0.50
N C 0.51
V C 0.81
P C 0.61
W H 0.61
G H 0.71
Q H 0.84
K H 0.83
A H 0.84
F H 0.83
K H 0.82
G H 0.78
Y H 0.67
L C 0.50
G C 0.75
E C 0.69
E C 0.61
K H 0.58
A H 0.62
Q H 0.63
W H 0.64
E H 0.62
A H 0.59
Y H 0.48
D C 0.55
P H 0.86
C H 0.89
L H 0.91
L H 0.90
I H 0.86
K H 0.78
N H 0.60
I C 0.54
R C 0.67
H C 0.75
V C 0.68
G C 0.76
D C 0.72
D C 0.72
R C 0.60
I E 0.75
L E 0.85
I E 0.84
H E 0.78
V E 0.49
G C 0.75
D C 0.75
S C 0.68
D C 0.55
P H 0.54
F H 0.50
L H 0.58
E H 0.65
E H 0.62
H H 0.49
L C 0.70
K C 0.84
P H 0.76
E H 0.83
L H 0.89
L H 0.93
L H 0.94
E H 0.94
A H 0.93
V H 0.91
K H 0.88
A H 0.77
T H 0.53
S C 0.72
W C 0.83
Q C 0.90
D C 0.83
Y C 0.60
V E 0.80
E E 0.90
I E 0.89
K E 0.87
K E 0.65
V C 0.71
H C 0.87
G C 0.89
F C 0.80
D C 0.73
H C 0.59
S H 0.48
Y H 0.75
Y H 0.80
F H 0.82
V H 0.85
S H 0.86
T H 0.84
F H 0.78
V H 0.88
P H 0.94
E H 0.95
H H 0.95
A H 0.96
E H 0.96
F H 0.95
H H 0.95
A H 0.94
R H 0.91
N H 0.82
L H 0.55
G C 0.60
L C 0.69
I C 0.91
END