PFRMAT SS
TARGET T0195
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   11 (1 ABCDEFGHIST )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0195.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 45
METHOD
MODEL 1
M E 0.314
K E 0.330
V E 0.366
V E 0.248
K E 0.224
E E 0.247
F E 0.238
S E 0.271
V A 0.252
C D 0.151
G D 0.284
G C 0.183
R E 0.391
L E 0.447
I E 0.567
K E 0.477
L E 0.598
S E 0.464
H E 0.355
N E 0.262
S E 0.357
N H 0.368
S H 0.221
T B 0.327
K S 0.398
T E 0.384
S A 0.373
M B 0.376
N A 0.481
V E 0.614
N E 0.673
I E 0.551
Y E 0.521
L E 0.352
P B 0.380
K H 0.310
H S 0.201
Y B 0.213
Y E 0.237
A H 0.271
Q H 0.233
D B 0.198
F S 0.161
P H 0.189
R H 0.197
N S 0.225
K C 0.188
R B 0.185
I B 0.561
P E 0.505
T E 0.603
V E 0.504
F E 0.538
Y E 0.397
L A 0.242
S B 0.317
G S 0.309
L E 0.209
T G 0.160
C S 0.256
T C 0.332
P H 0.457
D H 0.656
N H 0.533
A H 0.602
S H 0.662
E H 0.686
K H 0.520
A H 0.306
F H 0.570
W H 0.773
Q H 0.848
F H 0.873
Q H 0.899
A H 0.877
D H 0.748
K H 0.670
Y B 0.730
G S 0.447
F E 0.480
A E 0.800
I E 0.584
V E 0.458
F B 0.326
P E 0.299
D E 0.315
T B 0.251
S C 0.388
P H 0.237
R D 0.189
G S 0.305
D B 0.142
E S 0.176
V B 0.189
A H 0.220
N S 0.348
D B 0.289
P B 0.256
E E 0.186
G H 0.327
S H 0.270
W E 0.220
D E 0.320
F H 0.236
G D 0.274
Q B 0.157
G S 0.178
A E 0.179
G D 0.198
F E 0.291
Y E 0.310
L B 0.264
N E 0.219
A I 0.405
T H 0.389
Q H 0.219
E B 0.318
P H 0.271
Y H 0.225
A H 0.336
Q H 0.343
H H 0.216
Y H 0.368
Q H 0.494
M H 0.626
Y H 0.773
D H 0.831
Y H 0.816
I H 0.848
H H 0.820
K H 0.850
E H 0.790
L H 0.839
P H 0.880
Q H 0.906
T H 0.880
L H 0.766
D H 0.650
S H 0.604
H S 0.288
F E 0.225
N H 0.295
K H 0.260
N B 0.206
G H 0.327
D H 0.403
V H 0.502
K H 0.478
L H 0.357
D H 0.517
F H 0.421
L H 0.247
D H 0.187
N H 0.258
V E 0.227
A E 0.314
I E 0.231
T E 0.137
G S 0.155
H H 0.196
S H 0.192
M H 0.216
G H 0.289
G H 0.617
Y H 0.790
G H 0.879
A H 0.922
I H 0.932
C H 0.889
G H 0.849
Y H 0.782
L H 0.618
K H 0.287
G B 0.271
Y S 0.357
S B 0.244
G E 0.193
K E 0.158
R E 0.231
Y E 0.374
K E 0.199
S E 0.289
C E 0.259
S E 0.251
A E 0.195
F S 0.420
A B 0.206
P H 0.256
I H 0.222
V E 0.239
N E 0.386
P I 0.378
S H 0.371
N S 0.587
V B 0.369
P H 0.300
W H 0.577
G H 0.511
Q H 0.754
K H 0.849
A H 0.817
F H 0.763
K H 0.702
G H 0.606
Y H 0.447
L B 0.247
G S 0.260
E C 0.190
E H 0.264
K H 0.403
A H 0.384
Q H 0.381
W H 0.381
E H 0.427
A H 0.440
Y H 0.361
D H 0.371
P H 0.734
C H 0.845
L H 0.867
L H 0.830
I H 0.681
K H 0.659
N S 0.369
I H 0.262
R H 0.212
H E 0.231
V H 0.303
G S 0.297
D E 0.195
D H 0.190
R E 0.249
I E 0.467
L E 0.532
I E 0.414
H A 0.301
V B 0.192
G D 0.214
D H 0.329
S H 0.343
D H 0.453
P H 0.659
F H 0.640
L H 0.534
E H 0.573
E H 0.525
H H 0.339
L S 0.243
K B 0.380
P H 0.553
E H 0.826
L H 0.801
L H 0.902
L H 0.925
E H 0.923
A H 0.888
V H 0.810
K H 0.713
A H 0.564
T H 0.280
S S 0.222
W B 0.251
Q S 0.413
D B 0.422
Y E 0.460
V E 0.578
E E 0.616
I E 0.502
K E 0.562
K E 0.322
V E 0.273
H G 0.162
G D 0.419
F H 0.172
D E 0.162
H H 0.300
S H 0.430
Y H 0.628
Y H 0.709
F H 0.802
V H 0.862
S H 0.829
T H 0.857
F H 0.688
V H 0.749
P H 0.879
E H 0.890
H H 0.908
A H 0.919
E H 0.946
F H 0.938
H H 0.873
A H 0.781
R H 0.794
N H 0.539
L B 0.498
G H 0.264
L H 0.290
I H 0.207
END