PFRMAT SS
TARGET T0194
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    6 (1 EBGHTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0194.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 43
METHOD
MODEL 1
M H 0.580
A H 0.714
N H 0.743
A H 0.731
P H 0.673
K H 0.579
G C 0.528
V C 0.655
K C 0.655
F C 0.590
S C 0.447
T T 0.413
S C 0.463
Q C 0.574
T C 0.669
T C 0.781
E H 0.826
E H 0.916
I H 0.964
V H 0.985
R H 0.991
A H 0.991
K H 0.993
V H 0.990
S H 0.980
E H 0.933
L H 0.874
V H 0.790
E H 0.653
Q T 0.394
Y T 0.579
D C 0.495
L E 0.753
I E 0.985
I E 0.995
G E 0.995
I E 0.973
P E 0.825
I E 0.452
D T 0.544
K T 0.546
E T 0.502
I T 0.471
S C 0.387
A H 0.551
S H 0.845
Y H 0.922
A H 0.938
N H 0.958
W H 0.993
K H 0.989
L H 0.988
V H 0.985
E H 0.976
K H 0.937
D H 0.851
Y H 0.443
A T 0.509
S C 0.490
K C 0.462
F E 0.937
H E 0.984
V E 0.985
L E 0.916
D E 0.586
A C 0.443
R T 0.512
A T 0.350
V H 0.438
E H 0.482
M H 0.617
I H 0.685
I H 0.865
D H 0.919
W H 0.950
L H 0.987
I H 0.995
N H 0.997
D H 0.997
I H 0.998
K H 0.997
G H 0.994
W H 0.991
L H 0.980
N H 0.945
T H 0.709
N C 0.576
P T 0.522
Y T 0.550
S C 0.725
R H 0.870
E H 0.926
G H 0.960
L H 0.985
D H 0.995
R H 0.994
F H 0.996
V H 0.993
E H 0.985
Q H 0.940
Y H 0.883
R H 0.770
K H 0.566
K T 0.396
T C 0.458
A E 0.427
A E 0.960
V E 0.990
L E 0.992
F E 0.975
V E 0.833
T E 0.398
D T 0.442
T T 0.490
K T 0.539
P T 0.453
L T 0.353
V E 0.357
A T 0.356
G T 0.430
G T 0.364
R E 0.371
L T 0.457
S T 0.490
N H 0.441
L H 0.680
K H 0.861
S H 0.717
F H 0.700
I H 0.815
I H 0.870
K H 0.868
S H 0.883
L H 0.821
K H 0.630
F H 0.724
H H 0.704
L H 0.686
L H 0.629
I H 0.609
S H 0.578
F E 0.494
L E 0.544
G T 0.816
E T 0.931
N T 0.968
G T 0.912
K C 0.756
L E 0.753
Q E 0.730
F E 0.477
F H 0.594
D H 0.545
K H 0.545
A H 0.488
R H 0.531
S H 0.411
A H 0.875
H H 0.960
D H 0.975
A H 0.990
H H 0.997
K H 0.998
L H 0.998
A H 0.997
V H 0.998
K H 0.997
F H 0.998
L H 0.995
K H 0.983
K H 0.935
Q H 0.746
L H 0.652
L H 0.453
K H 0.379
H T 0.505
S T 0.559
A T 0.615
K T 0.545
L T 0.435
K E 0.499
R E 0.707
G E 0.879
A E 0.933
F E 0.965
L E 0.970
T E 0.947
T E 0.865
V E 0.578
F T 0.433
D T 0.488
E H 0.538
Q H 0.759
T H 0.804
N H 0.892
T H 0.936
N H 0.934
L H 0.951
V H 0.976
Q H 0.984
E H 0.987
F H 0.975
D H 0.957
K H 0.901
L H 0.705
L C 0.400
D C 0.451
H C 0.422
S T 0.413
I C 0.398
N C 0.392
I E 0.515
E E 0.704
Q E 0.777
S E 0.694
L E 0.528
L C 0.464
S C 0.376
P H 0.275
V E 0.392
I E 0.609
C E 0.646
T E 0.563
H E 0.563
T E 0.422
G T 0.805
L T 0.942
N T 0.914
S E 0.590
Y E 0.939
V E 0.989
I E 0.990
V E 0.976
L E 0.941
Q E 0.849
G C 0.522
E C 0.968
END