PFRMAT SS TARGET T0194 AUTHOR 4069-6308-1312 METHOD Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 15 METHOD 7 15 METHOD 9 15 METHOD 13 7 (1 EBGHSTL ) METHOD The input amino acid frequencies were determined from METHOD alignment T0194.t2k-thin90.a2m.gz METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1) METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 43 METHOD MODEL 1 M C 0.971 A C 0.514 N C 0.344 A H 0.332 P H 0.410 K T 0.354 G T 0.462 V C 0.488 K C 0.562 F C 0.696 S C 0.553 T C 0.400 S C 0.493 Q S 0.462 T C 0.699 T C 0.849 E H 0.870 E H 0.939 I H 0.960 V H 0.986 R H 0.989 A H 0.985 K H 0.978 V H 0.977 S H 0.973 E H 0.962 L H 0.938 V H 0.837 E H 0.511 Q T 0.600 Y C 0.780 D S 0.559 L E 0.928 I E 0.993 I E 0.997 G E 0.995 I E 0.961 P E 0.809 I E 0.495 D C 0.507 K T 0.336 E T 0.418 I H 0.525 S H 0.710 A H 0.814 S H 0.923 Y H 0.976 A H 0.981 N H 0.984 W H 0.990 K H 0.986 L H 0.975 V H 0.954 E H 0.915 K H 0.780 D H 0.604 Y H 0.337 A C 0.416 S S 0.491 K C 0.435 F E 0.781 H E 0.958 V E 0.945 L E 0.895 D E 0.502 A C 0.539 R S 0.367 A H 0.363 V H 0.624 E H 0.783 M H 0.867 I H 0.935 I H 0.973 D H 0.984 W H 0.992 L H 0.997 I H 0.997 N H 0.998 D H 0.998 I H 0.997 K H 0.996 G H 0.991 W H 0.987 L H 0.977 N H 0.882 T T 0.667 N T 0.762 P C 0.544 Y C 0.510 S C 0.702 R H 0.923 E H 0.969 G H 0.973 L H 0.990 D H 0.991 R H 0.985 F H 0.977 V H 0.978 E H 0.967 Q H 0.941 Y H 0.914 R H 0.799 K H 0.461 K T 0.466 T C 0.478 A E 0.555 A E 0.951 V E 0.980 L E 0.988 F E 0.963 V E 0.728 T S 0.318 D C 0.453 T H 0.684 K H 0.811 P H 0.770 L H 0.825 V H 0.712 A T 0.522 G T 0.803 G C 0.446 R C 0.613 L C 0.470 S C 0.387 N H 0.574 L H 0.861 K H 0.909 S H 0.887 F H 0.909 I H 0.891 I H 0.776 K H 0.636 S H 0.440 L T 0.395 K T 0.439 F C 0.650 H C 0.382 L H 0.695 L H 0.585 I H 0.458 S H 0.436 F H 0.381 L E 0.302 G C 0.712 E T 0.609 N T 0.794 G S 0.433 K E 0.471 L E 0.751 Q E 0.627 F E 0.400 F H 0.407 D H 0.475 K H 0.564 A H 0.574 R H 0.584 S H 0.488 A H 0.648 H H 0.916 D H 0.950 A H 0.969 H H 0.989 K H 0.993 L H 0.993 A H 0.994 V H 0.996 K H 0.992 F H 0.983 L H 0.976 K H 0.940 K H 0.866 Q H 0.820 L H 0.734 L H 0.610 K H 0.446 H T 0.378 S T 0.436 A C 0.319 K C 0.367 L C 0.549 K E 0.464 R E 0.678 G E 0.834 A E 0.958 F E 0.981 L E 0.985 T E 0.965 T E 0.841 V C 0.387 F C 0.343 D C 0.440 E H 0.341 Q H 0.684 T H 0.801 N H 0.924 T H 0.961 N H 0.968 L H 0.976 V H 0.982 Q H 0.980 E H 0.974 F H 0.961 D H 0.923 K H 0.756 L H 0.520 L H 0.299 D C 0.389 H C 0.353 S C 0.384 I C 0.334 N E 0.376 I E 0.528 E E 0.567 Q E 0.625 S E 0.599 L E 0.518 L C 0.363 S C 0.462 P C 0.313 V E 0.487 I H 0.508 C E 0.665 T E 0.605 H E 0.459 T H 0.356 G C 0.687 L T 0.835 N T 0.887 S C 0.609 Y E 0.841 V E 0.978 I E 0.979 V E 0.981 L E 0.932 Q E 0.723 G C 0.711 E C 0.999 END