PFRMAT SS
TARGET T0194
AUTHOR 4069-6308-1312
METHOD Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    7 (1 EBGHSTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0194.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 43
METHOD
MODEL 1
M C 0.971
A C 0.514
N C 0.344
A H 0.332
P H 0.410
K T 0.354
G T 0.462
V C 0.488
K C 0.562
F C 0.696
S C 0.553
T C 0.400
S C 0.493
Q S 0.462
T C 0.699
T C 0.849
E H 0.870
E H 0.939
I H 0.960
V H 0.986
R H 0.989
A H 0.985
K H 0.978
V H 0.977
S H 0.973
E H 0.962
L H 0.938
V H 0.837
E H 0.511
Q T 0.600
Y C 0.780
D S 0.559
L E 0.928
I E 0.993
I E 0.997
G E 0.995
I E 0.961
P E 0.809
I E 0.495
D C 0.507
K T 0.336
E T 0.418
I H 0.525
S H 0.710
A H 0.814
S H 0.923
Y H 0.976
A H 0.981
N H 0.984
W H 0.990
K H 0.986
L H 0.975
V H 0.954
E H 0.915
K H 0.780
D H 0.604
Y H 0.337
A C 0.416
S S 0.491
K C 0.435
F E 0.781
H E 0.958
V E 0.945
L E 0.895
D E 0.502
A C 0.539
R S 0.367
A H 0.363
V H 0.624
E H 0.783
M H 0.867
I H 0.935
I H 0.973
D H 0.984
W H 0.992
L H 0.997
I H 0.997
N H 0.998
D H 0.998
I H 0.997
K H 0.996
G H 0.991
W H 0.987
L H 0.977
N H 0.882
T T 0.667
N T 0.762
P C 0.544
Y C 0.510
S C 0.702
R H 0.923
E H 0.969
G H 0.973
L H 0.990
D H 0.991
R H 0.985
F H 0.977
V H 0.978
E H 0.967
Q H 0.941
Y H 0.914
R H 0.799
K H 0.461
K T 0.466
T C 0.478
A E 0.555
A E 0.951
V E 0.980
L E 0.988
F E 0.963
V E 0.728
T S 0.318
D C 0.453
T H 0.684
K H 0.811
P H 0.770
L H 0.825
V H 0.712
A T 0.522
G T 0.803
G C 0.446
R C 0.613
L C 0.470
S C 0.387
N H 0.574
L H 0.861
K H 0.909
S H 0.887
F H 0.909
I H 0.891
I H 0.776
K H 0.636
S H 0.440
L T 0.395
K T 0.439
F C 0.650
H C 0.382
L H 0.695
L H 0.585
I H 0.458
S H 0.436
F H 0.381
L E 0.302
G C 0.712
E T 0.609
N T 0.794
G S 0.433
K E 0.471
L E 0.751
Q E 0.627
F E 0.400
F H 0.407
D H 0.475
K H 0.564
A H 0.574
R H 0.584
S H 0.488
A H 0.648
H H 0.916
D H 0.950
A H 0.969
H H 0.989
K H 0.993
L H 0.993
A H 0.994
V H 0.996
K H 0.992
F H 0.983
L H 0.976
K H 0.940
K H 0.866
Q H 0.820
L H 0.734
L H 0.610
K H 0.446
H T 0.378
S T 0.436
A C 0.319
K C 0.367
L C 0.549
K E 0.464
R E 0.678
G E 0.834
A E 0.958
F E 0.981
L E 0.985
T E 0.965
T E 0.841
V C 0.387
F C 0.343
D C 0.440
E H 0.341
Q H 0.684
T H 0.801
N H 0.924
T H 0.961
N H 0.968
L H 0.976
V H 0.982
Q H 0.980
E H 0.974
F H 0.961
D H 0.923
K H 0.756
L H 0.520
L H 0.299
D C 0.389
H C 0.353
S C 0.384
I C 0.334
N E 0.376
I E 0.528
E E 0.567
Q E 0.625
S E 0.599
L E 0.518
L C 0.363
S C 0.462
P C 0.313
V E 0.487
I H 0.508
C E 0.665
T E 0.605
H E 0.459
T H 0.356
G C 0.687
L T 0.835
N T 0.887
S C 0.609
Y E 0.841
V E 0.978
I E 0.979
V E 0.981
L E 0.932
Q E 0.723
G C 0.711
E C 0.999
END