PFRMAT SS
TARGET T0194
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   11 (1 ABCDEFGHIST )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0194.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 43
METHOD
MODEL 1
M H 0.417
A H 0.454
N H 0.456
A H 0.426
P H 0.555
K B 0.350
G S 0.535
V S 0.153
K B 0.354
F E 0.245
S E 0.257
T E 0.210
S E 0.260
Q B 0.393
T B 0.429
T B 0.609
E H 0.722
E H 0.894
I H 0.905
V H 0.939
R H 0.944
A H 0.963
K H 0.934
V H 0.838
S H 0.906
E H 0.871
L H 0.710
V H 0.550
E H 0.262
Q S 0.410
Y T 0.275
D G 0.341
L E 0.580
I E 0.759
I E 0.700
G E 0.614
I E 0.610
P E 0.529
I E 0.298
D B 0.277
K I 0.436
E S 0.203
I S 0.266
S H 0.197
A H 0.320
S H 0.557
Y H 0.774
A H 0.871
N H 0.900
W H 0.912
K H 0.941
L H 0.899
V H 0.816
E H 0.732
K H 0.701
D H 0.377
Y I 0.226
A I 0.288
S B 0.281
K A 0.216
F E 0.689
H E 0.787
V E 0.576
L E 0.388
D E 0.297
A I 0.266
R H 0.362
A H 0.405
V H 0.448
E H 0.467
M H 0.638
I H 0.769
I H 0.848
D H 0.888
W H 0.927
L H 0.947
I H 0.958
N H 0.973
D H 0.974
I H 0.950
K H 0.954
G H 0.965
W H 0.945
L H 0.758
N H 0.753
T B 0.740
N S 0.654
P B 0.242
Y B 0.313
S B 0.502
R H 0.686
E H 0.916
G H 0.918
L H 0.937
D H 0.940
R H 0.953
F H 0.922
V H 0.864
E H 0.900
Q H 0.831
Y H 0.669
R H 0.559
K H 0.431
K S 0.336
T E 0.374
A E 0.214
A E 0.605
V E 0.708
L E 0.681
F E 0.571
V E 0.355
T H 0.329
D B 0.278
T I 0.395
K H 0.674
P H 0.687
L H 0.602
V H 0.322
A G 0.293
G S 0.409
G C 0.158
R B 0.427
L B 0.179
S H 0.186
N H 0.256
L H 0.592
K H 0.573
S H 0.616
F H 0.773
I H 0.787
I H 0.766
K H 0.740
S H 0.690
L B 0.582
K A 0.383
F E 0.300
H B 0.297
L A 0.554
L F 0.457
I E 0.417
S E 0.310
F E 0.315
L B 0.361
G C 0.380
E H 0.414
N B 0.718
G S 0.572
K B 0.392
L A 0.481
Q B 0.485
F A 0.480
F H 0.237
D H 0.210
K H 0.306
A H 0.255
R H 0.522
S H 0.432
A H 0.804
H H 0.903
D H 0.917
A H 0.930
H H 0.953
K H 0.963
L H 0.968
A H 0.949
V H 0.945
K H 0.962
F H 0.927
L H 0.799
K H 0.835
K H 0.719
Q H 0.486
L H 0.400
L H 0.498
K H 0.272
H H 0.165
S H 0.205
A B 0.202
K S 0.223
L E 0.266
K E 0.256
R E 0.310
G E 0.450
A E 0.609
F E 0.592
L E 0.600
T E 0.473
T E 0.354
V E 0.207
F B 0.182
D B 0.198
E H 0.409
Q H 0.735
T H 0.789
N H 0.874
T H 0.926
N H 0.944
L H 0.940
V H 0.933
Q H 0.938
E H 0.923
F H 0.855
D H 0.755
K H 0.602
L S 0.298
L H 0.177
D E 0.149
H E 0.165
S E 0.208
I E 0.196
N E 0.360
I E 0.377
E E 0.399
Q A 0.393
S E 0.398
L E 0.203
L B 0.163
S H 0.204
P E 0.281
V E 0.419
I E 0.422
C E 0.358
T E 0.299
H A 0.257
T D 0.254
G C 0.424
L G 0.452
N S 0.480
S E 0.464
Y E 0.624
V E 0.620
I E 0.602
V E 0.571
L E 0.504
Q E 0.336
G B 0.251
E H 0.151
END