PFRMAT SS TARGET T0194 METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 15 METHOD 7 15 METHOD 9 15 METHOD 13 11 (1 ABCDEFGHIST ) METHOD The input amino acid frequencies were determined from METHOD alignment T0194.t2k-thin90.a2m.gz METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1) METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 43 METHOD MODEL 1 M H 0.417 A H 0.454 N H 0.456 A H 0.426 P H 0.555 K B 0.350 G S 0.535 V S 0.153 K B 0.354 F E 0.245 S E 0.257 T E 0.210 S E 0.260 Q B 0.393 T B 0.429 T B 0.609 E H 0.722 E H 0.894 I H 0.905 V H 0.939 R H 0.944 A H 0.963 K H 0.934 V H 0.838 S H 0.906 E H 0.871 L H 0.710 V H 0.550 E H 0.262 Q S 0.410 Y T 0.275 D G 0.341 L E 0.580 I E 0.759 I E 0.700 G E 0.614 I E 0.610 P E 0.529 I E 0.298 D B 0.277 K I 0.436 E S 0.203 I S 0.266 S H 0.197 A H 0.320 S H 0.557 Y H 0.774 A H 0.871 N H 0.900 W H 0.912 K H 0.941 L H 0.899 V H 0.816 E H 0.732 K H 0.701 D H 0.377 Y I 0.226 A I 0.288 S B 0.281 K A 0.216 F E 0.689 H E 0.787 V E 0.576 L E 0.388 D E 0.297 A I 0.266 R H 0.362 A H 0.405 V H 0.448 E H 0.467 M H 0.638 I H 0.769 I H 0.848 D H 0.888 W H 0.927 L H 0.947 I H 0.958 N H 0.973 D H 0.974 I H 0.950 K H 0.954 G H 0.965 W H 0.945 L H 0.758 N H 0.753 T B 0.740 N S 0.654 P B 0.242 Y B 0.313 S B 0.502 R H 0.686 E H 0.916 G H 0.918 L H 0.937 D H 0.940 R H 0.953 F H 0.922 V H 0.864 E H 0.900 Q H 0.831 Y H 0.669 R H 0.559 K H 0.431 K S 0.336 T E 0.374 A E 0.214 A E 0.605 V E 0.708 L E 0.681 F E 0.571 V E 0.355 T H 0.329 D B 0.278 T I 0.395 K H 0.674 P H 0.687 L H 0.602 V H 0.322 A G 0.293 G S 0.409 G C 0.158 R B 0.427 L B 0.179 S H 0.186 N H 0.256 L H 0.592 K H 0.573 S H 0.616 F H 0.773 I H 0.787 I H 0.766 K H 0.740 S H 0.690 L B 0.582 K A 0.383 F E 0.300 H B 0.297 L A 0.554 L F 0.457 I E 0.417 S E 0.310 F E 0.315 L B 0.361 G C 0.380 E H 0.414 N B 0.718 G S 0.572 K B 0.392 L A 0.481 Q B 0.485 F A 0.480 F H 0.237 D H 0.210 K H 0.306 A H 0.255 R H 0.522 S H 0.432 A H 0.804 H H 0.903 D H 0.917 A H 0.930 H H 0.953 K H 0.963 L H 0.968 A H 0.949 V H 0.945 K H 0.962 F H 0.927 L H 0.799 K H 0.835 K H 0.719 Q H 0.486 L H 0.400 L H 0.498 K H 0.272 H H 0.165 S H 0.205 A B 0.202 K S 0.223 L E 0.266 K E 0.256 R E 0.310 G E 0.450 A E 0.609 F E 0.592 L E 0.600 T E 0.473 T E 0.354 V E 0.207 F B 0.182 D B 0.198 E H 0.409 Q H 0.735 T H 0.789 N H 0.874 T H 0.926 N H 0.944 L H 0.940 V H 0.933 Q H 0.938 E H 0.923 F H 0.855 D H 0.755 K H 0.602 L S 0.298 L H 0.177 D E 0.149 H E 0.165 S E 0.208 I E 0.196 N E 0.360 I E 0.377 E E 0.399 Q A 0.393 S E 0.398 L E 0.203 L B 0.163 S H 0.204 P E 0.281 V E 0.419 I E 0.422 C E 0.358 T E 0.299 H A 0.257 T D 0.254 G C 0.424 L G 0.452 N S 0.480 S E 0.464 Y E 0.624 V E 0.620 I E 0.602 V E 0.571 L E 0.504 Q E 0.336 G B 0.251 E H 0.151 END